Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH66_RS17890 Genome accession   NZ_CP117432
Coordinates   3943141..3943776 (-) Length   211 a.a.
NCBI ID   WP_042944912.1    Uniprot ID   A0A9X0YGW3
Organism   Pseudomonas sp. FP597     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3938141..3948776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH66_RS17855 (PSH66_17850) - 3938503..3939174 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  PSH66_RS17860 (PSH66_17855) murB 3939256..3940275 (-) 1020 WP_003174665.1 UDP-N-acetylmuramate dehydrogenase -
  PSH66_RS17865 (PSH66_17860) - 3940272..3940736 (-) 465 WP_003174666.1 low molecular weight protein-tyrosine-phosphatase -
  PSH66_RS17870 (PSH66_17865) kdsB 3940736..3941500 (-) 765 WP_003174667.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH66_RS17875 (PSH66_17870) - 3941497..3941682 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH66_RS17880 (PSH66_17875) lpxK 3941706..3942716 (-) 1011 WP_141064397.1 tetraacyldisaccharide 4'-kinase -
  PSH66_RS17885 (PSH66_17880) - 3942716..3943144 (-) 429 WP_078733666.1 biopolymer transporter ExbD -
  PSH66_RS17890 (PSH66_17885) exbB 3943141..3943776 (-) 636 WP_042944912.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH66_RS17895 (PSH66_17890) comA 3943842..3946067 (-) 2226 WP_305427354.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH66_RS17900 (PSH66_17895) - 3946203..3946718 (+) 516 WP_078825180.1 DUF2062 domain-containing protein -
  PSH66_RS17905 (PSH66_17900) - 3946722..3948089 (-) 1368 WP_305427355.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22755.84 Da        Isoelectric Point: 6.8761

>NTDB_id=784964 PSH66_RS17890 WP_042944912.1 3943141..3943776(-) (exbB) [Pseudomonas sp. FP597]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGNA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784964 PSH66_RS17890 WP_042944912.1 3943141..3943776(-) (exbB) [Pseudomonas sp. FP597]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATTGTTGC
CGAACGCCTGTGGACGTTGCGCGCCAGTCGTGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTGGACAAGGAAAAACTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTTGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTTATCCATGAACTGGAACGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGTTTGCTGGGGACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCGGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGGGGGCAACGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848