Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   Q3V68_RS08760 Genome accession   NZ_CP130540
Coordinates   1777716..1778318 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain SA10-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772716..1783318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V68_RS08740 yajC 1774212..1774472 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  Q3V68_RS08745 tgt 1774491..1775630 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  Q3V68_RS08750 queA 1775653..1776678 (-) 1026 WP_001019166.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  Q3V68_RS08755 ruvB 1776680..1777684 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q3V68_RS08760 ruvA 1777716..1778318 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  Q3V68_RS08765 - 1778332..1778787 (-) 456 WP_000368900.1 ACT domain-containing protein -
  Q3V68_RS08770 obgE 1778800..1780092 (-) 1293 WP_000496105.1 GTPase ObgE -
  Q3V68_RS08775 rpmA 1780848..1781132 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  Q3V68_RS08780 - 1781144..1781464 (-) 321 WP_000633690.1 ribosomal-processing cysteine protease Prp -
  Q3V68_RS08785 rplU 1781470..1781778 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  Q3V68_RS08790 mreD 1782014..1782544 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=784955 Q3V68_RS08760 WP_000271547.1 1777716..1778318(-) (ruvA) [Staphylococcus aureus strain SA10-SX]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=784955 Q3V68_RS08760 WP_000271547.1 1777716..1778318(-) (ruvA) [Staphylococcus aureus strain SA10-SX]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425