Detailed information NTG0784939

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH65_RS04770
• Genome accession: NZ_CP117431
• Coordinates: 1008616..1009488 (-)
• Length: 290 a.a.
• NCBI ID: WP_305425148.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP603
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1003616..1014488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH65_RS04740 (PSH65_04740)	-	1004911..1006179 (+)	1269	WP_305425143.1	OprD family porin	-
PSH65_RS04745 (PSH65_04745)	-	1006186..1006428 (-)	243	WP_305425144.1	DUF2790 domain-containing protein	-
PSH65_RS04750 (PSH65_04750)	-	1006821..1007510 (+)	690	WP_305425145.1	energy-coupling factor ABC transporter permease	-
PSH65_RS04755 (PSH65_04755)	-	1007574..1007789 (+)	216	WP_007938959.1	hypothetical protein	-
PSH65_RS04760 (PSH65_04760)	yacG	1007799..1007999 (-)	201	WP_305425146.1	DNA gyrase inhibitor YacG	-
PSH65_RS04765 (PSH65_04765)	coaE	1007996..1008619 (-)	624	WP_305425147.1	dephospho-CoA kinase	-
PSH65_RS04770 (PSH65_04770)	pilD	1008616..1009488 (-)	873	WP_305425148.1	A24 family peptidase	Machinery gene
PSH65_RS04775 (PSH65_04775)	pilC	1009490..1010707 (-)	1218	WP_305425149.1	type II secretion system F family protein	Machinery gene
PSH65_RS04780 (PSH65_04780)	pilB	1010710..1012407 (-)	1698	WP_305425150.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH65_RS04785 (PSH65_04785)	-	1012634..1013059 (+)	426	WP_305425151.1	pilin	-
PSH65_RS04790 (PSH65_04790)	-	1013377..1013733 (+)	357	WP_305425152.1	BON domain-containing protein	-
PSH65_RS04795 (PSH65_04795)	-	1013908..1014204 (-)	297	WP_305425153.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32195.40 Da
• Isoelectric Point: 7.6641

>NTDB_id=784939 PSH65_RS04770 WP_305425148.1 1008616..1009488(-) (pilD) [Pseudomonas sp. FP603]
MSLNEFLSLNPQAFVITALVIGLLIGSFLNVVVWRLPKMLEREWRLQAHEVLNLPPEVPGPTYNLILPHSECPDCGHRIR
AWENIPVLSYLFLRGRCSNCAAPISKRYPLTELACGVLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHDALWGAVAGYMALWTVFWLFKLITGKDGIGYGDFKLLAMLGAWGGWQILPLTILLSSLLG
AIIGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=784939 PSH65_RS04770 WP_305425148.1 1008616..1009488(-) (pilD) [Pseudomonas sp. FP603]
ATGTCCTTGAACGAATTTCTGAGTCTCAACCCGCAGGCCTTCGTGATCACTGCATTGGTGATCGGCTTGCTGATCGGCAG
TTTCCTCAATGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCCTGCAGGCCCACGAGGTACTGAATT
TGCCACCCGAAGTCCCTGGCCCGACTTACAACCTGATACTGCCTCACTCCGAGTGCCCCGACTGCGGCCATCGGATTCGA
GCCTGGGAAAACATTCCCGTGCTCAGTTATCTGTTTTTACGTGGACGATGCTCGAACTGCGCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTGCTATCGGCGTTCGTCGCCTGGCATTTCGGTTTCGGTTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGACGCCGAACACCAGCTGTTGCCGGACGTGCTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGGCTCTTCGTGTCTCTGCATGACGCGCTCTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGCTACGGCGACT
TCAAGCTATTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAAATCCTGCCGCTGACCATCCTGCTGTCATCGCTGCTGGGC
GCCATCATCGGGGTGATTTTGCTGCGCCTGCGGGACGCAAAAACCTCGACGCCGCTGCCCTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.579	98.276	0.507
pilD	Vibrio campbellii strain DS40M4	51.418	97.241	0.5
pilD	Acinetobacter baumannii D1279779	51.264	95.517	0.49
pilD	Acinetobacter nosocomialis M2	50.542	95.517	0.483
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459