Detailed information NTG0784910

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH88_RS04420
• Genome accession: NZ_CP117430
• Coordinates: 939696..941036 (-)
• Length: 446 a.a.
• NCBI ID: WP_305425089.1
• Uniprot ID: -
• Organism: Pseudomonas wuhanensis strain FP607
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 934696..946036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH88_RS04405 (PSH88_04405)	-	934897..938013 (+)	3117	WP_305483472.1	PilC/PilY family type IV pilus protein	-
PSH88_RS04410 (PSH88_04410)	-	938028..938429 (+)	402	WP_305425087.1	type IV pilin protein	-
PSH88_RS04415 (PSH88_04415)	thiO	938488..939588 (+)	1101	WP_305425088.1	glycine oxidase ThiO	-
PSH88_RS04420 (PSH88_04420)	pilR	939696..941036 (-)	1341	WP_305425089.1	sigma-54 dependent transcriptional regulator	Regulator
PSH88_RS04425 (PSH88_04425)	pilS	941039..942628 (-)	1590	WP_305425090.1	ATP-binding protein	Regulator
PSH88_RS04430 (PSH88_04430)	-	942618..942851 (-)	234	WP_305425091.1	PP0621 family protein	-
PSH88_RS04435 (PSH88_04435)	-	942986..944008 (-)	1023	WP_305425092.1	outer membrane protein assembly factor BamD	-
PSH88_RS04440 (PSH88_04440)	rluD	944161..945123 (+)	963	WP_038981503.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH88_RS04445 (PSH88_04445)	pgeF	945120..945845 (+)	726	WP_305425093.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49748.18 Da
• Isoelectric Point: 6.7529

>NTDB_id=784910 PSH88_RS04420 WP_305425089.1 939696..941036(-) (pilR) [Pseudomonas wuhanensis strain FP607]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARETFDLCLTDMRLPDGTGLALVQHIQQRYAQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTCALSLPAPGGASSAIDRRLLGDSLPMRSLRKQIDKLARSQAPV
YISGESGSGKELVARLIHDQGPRATRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDTEVTAERFRQDLYYRLNVIELRVPPLRERRDDIELLANN
MLKRLATGTGQPAAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLVEGNCNSDSDVPDLTQIDNLE
AYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=784910 PSH88_RS04420 WP_305425089.1 939696..941036(-) (pilR) [Pseudomonas wuhanensis strain FP607]
ATGAGCCCACGGCAAAAAATCCTGATCGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGCGCCCGCAACCTCGCAGAAGCGCAAGCACTGCTGGCACGGGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCGCAAGTGCCAGTGGCG
ATGATCACCGCCTACGGCAGCCTGGAGACGGCAATCAACGCCCTCAAGGCTGGCGCCTTCGACTTTCTGACCAAACCGGT
CGACCTCACCCGCCTGCGCGAACTGGTCACCTGCGCGCTGAGTTTGCCTGCGCCAGGCGGCGCCAGCAGTGCCATCGACC
GTCGTCTACTGGGCGACTCACTGCCAATGCGCAGCCTGCGCAAGCAAATCGACAAACTGGCCCGCAGCCAGGCTCCGGTG
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTCGCTCGACTGATCCACGATCAAGGCCCACGCGCCACCCGACC
ATTCGTGCCGGTGAACTGTGGGGCGATTCCGTCGGAATTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCGGCCCAGGGCGGCACTTTGTTCCTCGACGAAGTGGCTGACCTG
CCGCTGGCGATGCAGGTCAAGCTGTTGCGGGCGATTCAGGAGAAAGCCGTTCGCAGCATCGGTGGGCAGCAGGAAACCGT
GGTCGATGTGCGTATCCTCTGCGCCACCCACAAAGACCTCGATACCGAAGTCACCGCCGAACGCTTTCGCCAGGACTTGT
ACTACCGTCTGAACGTGATCGAGCTGCGGGTGCCGCCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCCAACAAT
ATGCTCAAGCGACTGGCGACTGGCACTGGCCAACCCGCTGCAAAACTCCATCCGCAAGCCCTCGACGCACTGAAAAGCTA
TCGTTTTCCAGGAAACGTGCGGGAATTGGAGAACATGCTTGAGCGGGCGCACACCTTGTGCGAGAACAAACAAATCGAAG
CCAGCGACCTACGATTGGTGGAAGGTAACTGCAATTCGGACAGCGACGTGCCGGACCTGACGCAGATCGACAACCTGGAA
GCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTGTCGTTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	99.327	0.785
pilR	Acinetobacter baumannii strain A118	48.366	100	0.498