Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH88_RS04425 Genome accession   NZ_CP117430
Coordinates   941039..942628 (-) Length   529 a.a.
NCBI ID   WP_305425090.1    Uniprot ID   -
Organism   Pseudomonas wuhanensis strain FP607     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 936039..947628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH88_RS04410 (PSH88_04410) - 938028..938429 (+) 402 WP_305425087.1 type IV pilin protein -
  PSH88_RS04415 (PSH88_04415) thiO 938488..939588 (+) 1101 WP_305425088.1 glycine oxidase ThiO -
  PSH88_RS04420 (PSH88_04420) pilR 939696..941036 (-) 1341 WP_305425089.1 sigma-54 dependent transcriptional regulator Regulator
  PSH88_RS04425 (PSH88_04425) pilS 941039..942628 (-) 1590 WP_305425090.1 ATP-binding protein Regulator
  PSH88_RS04430 (PSH88_04430) - 942618..942851 (-) 234 WP_305425091.1 PP0621 family protein -
  PSH88_RS04435 (PSH88_04435) - 942986..944008 (-) 1023 WP_305425092.1 outer membrane protein assembly factor BamD -
  PSH88_RS04440 (PSH88_04440) rluD 944161..945123 (+) 963 WP_038981503.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH88_RS04445 (PSH88_04445) pgeF 945120..945845 (+) 726 WP_305425093.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58706.49 Da        Isoelectric Point: 6.6651

>NTDB_id=784911 PSH88_RS04425 WP_305425090.1 941039..942628(-) (pilS) [Pseudomonas wuhanensis strain FP607]
MIAETSSPGNKQAQRLLRLYHLYRLSIGITLVLLISSNMDNQLLTFANDDLLRNGSWLYLVLNILLVVFQGNTRRPTQLF
SLALVDVLLLCGLFYAAGGMPSAIGNLLIVSVVISNTLLPGRIGLLIAAVGALGIVGLSFLLSFSHPTSPNDYLQVGTLG
ALCFAAALLVQGLIRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDDQRCVQLANHSALTLLGQEKLDGELID
DYSMALVERLQLWFNNPTLRPQSLKIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLRPWLEHFVAETREGATER
HQIHLRIGSGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDRAQAWLELFIDSDSQLPTLEVLDDGPGVAPDQRSHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=784911 PSH88_RS04425 WP_305425090.1 941039..942628(-) (pilS) [Pseudomonas wuhanensis strain FP607]
GTGATCGCTGAGACCTCCAGTCCCGGCAACAAACAGGCCCAGCGGCTGCTGCGCCTCTATCACCTCTACCGTTTAAGCAT
CGGCATCACCTTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGACGTTCGCCAATGACGACTTGCTGCGTA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCAGGGGAACACCCGGCGCCCGACGCAGTTGTTC
AGCCTGGCGCTGGTCGATGTCCTGCTGCTATGCGGCCTGTTCTATGCCGCTGGCGGCATGCCTAGCGCCATCGGCAACCT
GTTGATCGTGTCGGTGGTCATCAGCAATACCCTGCTGCCCGGGCGTATCGGCCTGCTGATTGCGGCAGTTGGCGCCCTCG
GCATCGTGGGGTTGAGCTTCCTTCTGAGCTTCAGCCACCCCACCAGTCCCAACGATTACCTGCAAGTCGGCACTCTCGGC
GCCCTGTGTTTTGCCGCAGCATTGTTGGTGCAAGGCTTGATCCGAAGGCTGGAAGTCAGCGAAACCCTCGCCGAGCAGCG
GGCTAGCGAAGTGCTCGGCCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTCTGGTGCTCGACG
ACCAACGGTGTGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTCGATGGCGAGTTGATCGAC
GACTATTCGATGGCGTTGGTCGAGCGGCTCCAACTGTGGTTCAACAATCCGACTTTGCGCCCGCAAAGCTTGAAAATCGC
CAGTAATGGGCTGGAGCTGCAACCAAGCTTTATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAGCAACTGAAACTCGCCGCCCTCGGTCGCCTGACTGCGGGTATTGCCCATGAG
ATCCGCAATCCACTGGGTGCCATTAGTCATGCCGCCCAGTTACTACAGGAATCCGAGGAACTGAACAGCGCGGATCGGCG
TCTGACACAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCGTGCCGCAACGGCTGGATCTGCGGCCGTGGTTGGAGCATTTCGTCGCTGAAACCCGCGAAGGAGCGACCGAACGT
CATCAAATTCACCTGCGCATCGGTTCCGGAGACTTCAAAACCCTGATGGATCCGAATCAGCTGACCCAGATTCTCGACAA
TCTGCTGCGCAACGCCTGGCGCCATAGCGCCCTGAACCATGATCGGGCACAGGCCTGGCTCGAGTTGTTCATTGACTCGG
ACAGCCAGTTGCCGACCCTTGAAGTTCTGGATGATGGCCCCGGCGTGGCACCGGACCAGCGCTCGCATTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601