Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH85_RS16435 Genome accession   NZ_CP117429
Coordinates   3594644..3596869 (-) Length   741 a.a.
NCBI ID   WP_241912209.1    Uniprot ID   -
Organism   Pseudomonas simiae strain FP689     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589644..3601869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH85_RS16400 (PSH85_16395) murB 3590049..3591068 (-) 1020 WP_010209654.1 UDP-N-acetylmuramate dehydrogenase -
  PSH85_RS16405 (PSH85_16400) - 3591065..3591529 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PSH85_RS16410 (PSH85_16405) kdsB 3591529..3592293 (-) 765 WP_010209652.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH85_RS16415 (PSH85_16410) - 3592290..3592475 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH85_RS16420 (PSH85_16415) lpxK 3592500..3593510 (-) 1011 WP_045791941.1 tetraacyldisaccharide 4'-kinase -
  PSH85_RS16425 (PSH85_16420) - 3593510..3593938 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  PSH85_RS16430 (PSH85_16425) exbB 3593935..3594570 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH85_RS16435 (PSH85_16430) comA 3594644..3596869 (-) 2226 WP_241912209.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH85_RS16440 (PSH85_16435) - 3597005..3597520 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PSH85_RS16445 (PSH85_16440) - 3597517..3598887 (-) 1371 WP_010209646.1 sensor histidine kinase -
  PSH85_RS16450 (PSH85_16445) - 3598874..3599602 (-) 729 WP_021492750.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80454.50 Da        Isoelectric Point: 11.0599

>NTDB_id=784887 PSH85_RS16435 WP_241912209.1 3594644..3596869(-) (comA) [Pseudomonas simiae strain FP689]
MRTGMFAFALGLLALRFLPALPPTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALEGQTRWVEG
RVSGLPQQTGDGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAAAAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGFWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRWRLRHLGLWWPLLLALNGVLVLEPL
ASVQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLVLPFVGEGLLWLAGGALDALFNGLAWLAGQMPAWIPAEVPPGYWLVSLLGATLLLLPKGVPFRVLGWPMLLLAV
FPPRAPVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGIGELDMLLLSHADADHAGGA
AAIAKGMPIKRVVGGETEGLPISLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQAKGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLRL
GAFAAPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=784887 PSH85_RS16435 WP_241912209.1 3594644..3596869(-) (comA) [Pseudomonas simiae strain FP689]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGCCGACCGGTTGGCT
GATCGCCCTGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACTTATCCCTTGGCGTTTTTTCTGTTGGGGCTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGTCTCAGGCCGGCGCTGGAGGGGCAAACACGCTGGGTGGAAGGG
CGGGTCAGCGGGTTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTACTCACCGACAGTCGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCGCGGTGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTTCATGGGTTTGATCAGGAGGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACGGGC
ACGGTAAAGGACGGAGAACGTCTGGCCCCGGCTGCCGCCGCCTGGCGTGACAGTGTGCGTCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGCAGGGAGGCAGGCCTGATTGCCTTGGTGTTGGGCGATGGCTCTGGATTGGCGGCGGCTGATTGGCAGGTAC
TACAGGACACCGGCACTGTGCACCTGCTGGTCATCTCCGGCCAGCACATCGGCTTGCTCGCTGGCTTGATCTACGGATTG
ATCGCCGGCCTGGCGCGCTATGGGTTCTGGCCTCGAACCTGGCCGTGGCTGCCGTGGGCCTGTGGGCTGGCGTTCACCAC
GGCATTGGGTTATGGCTTGCTGGCCGGGTTTGGCGTGCCGGTACAGCGCGCCTGTGTGATGGTTGGGTTGGTATTGTTGT
GGCGATGGCGCTTGCGTCATCTCGGGCTGTGGTGGCCGTTGTTGCTGGCGCTCAATGGGGTGCTGGTCCTGGAACCATTG
GCCAGTGTGCAGCCGGGTTTCTGGCTGTCATTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGCGGACGGCTGGGGCC
CTGGAGCCTATGGCAGGCCTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGCTGGTGTTGGGGT
TGCCCATCAGCCTGAGCGCACCATTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTATTGCCGTTGGCCCTG
TTGGGCAGCGCATTGCTGGTGCTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGAGGGGCGCTGGATGCCTTGTT
TAACGGCTTGGCGTGGCTCGCCGGGCAGATGCCGGCCTGGATTCCGGCCGAAGTACCGCCGGGGTATTGGCTGGTGAGTC
TGCTGGGCGCCACGTTGCTCCTGTTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGAGCGCCGGTGCCTGACGGGCAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGGCAATCGCTGATTTT
GCGTACCCGCCATCACACCTTGCTGTACGACGCCGGCCCGCGCTCCGGAGCCTTTGACCTGGGGGCCCGCGTGGTACTGC
CATCTTTGCGAAAACTCGGGATAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGCGCA
GCAGCCATTGCCAAAGGCATGCCGATCAAGCGCGTGGTGGGCGGAGAGACCGAAGGCCTGCCAATATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAGCGCTGGACCTGGGATGGCGTGACCTTCGAACTCTGGCAATGGCCTGACGCTATCAGCGGCA
ACGCGAAGTCCTGCGTTTTGCAGGTGCAGGCCAAGGGTGAGCGCCTGTTGCTGACCGGTGATATTGACCGCGCAGCCGAA
CAGGCCATGCTCGCGTCCCCCCTTGCTGTGCCCACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCGCCGCGATCTGTGCTGATCTCGCGTGGGCGCAGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACTCTGCCGAGCAGGGCGCCGTGCGTCTGCGATTA
GGGGCTTTCGCGGCGCCGGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.417

97.166

0.587
  comA Ralstonia pseudosolanacearum GMI1000

35.1

100

0.402