Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH85_RS16430 Genome accession   NZ_CP117429
Coordinates   3593935..3594570 (-) Length   211 a.a.
NCBI ID   WP_010209649.1    Uniprot ID   A0A1N7UJE1
Organism   Pseudomonas simiae strain FP689     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588935..3599570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH85_RS16395 (PSH85_16390) - 3589315..3589986 (+) 672 WP_187517255.1 Bax inhibitor-1/YccA family protein -
  PSH85_RS16400 (PSH85_16395) murB 3590049..3591068 (-) 1020 WP_010209654.1 UDP-N-acetylmuramate dehydrogenase -
  PSH85_RS16405 (PSH85_16400) - 3591065..3591529 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PSH85_RS16410 (PSH85_16405) kdsB 3591529..3592293 (-) 765 WP_010209652.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH85_RS16415 (PSH85_16410) - 3592290..3592475 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH85_RS16420 (PSH85_16415) lpxK 3592500..3593510 (-) 1011 WP_045791941.1 tetraacyldisaccharide 4'-kinase -
  PSH85_RS16425 (PSH85_16420) - 3593510..3593938 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  PSH85_RS16430 (PSH85_16425) exbB 3593935..3594570 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH85_RS16435 (PSH85_16430) comA 3594644..3596869 (-) 2226 WP_241912209.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH85_RS16440 (PSH85_16435) - 3597005..3597520 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PSH85_RS16445 (PSH85_16440) - 3597517..3598887 (-) 1371 WP_010209646.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22843.03 Da        Isoelectric Point: 7.3615

>NTDB_id=784886 PSH85_RS16430 WP_010209649.1 3593935..3594570(-) (exbB) [Pseudomonas simiae strain FP689]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784886 PSH85_RS16430 WP_010209649.1 3593935..3594570(-) (exbB) [Pseudomonas simiae strain FP689]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGTTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCAGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAGCTTGAGCGTTATAT
CAATGCTCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACAGTGCTGGGCATGATCGATATTTTCA
GCTCATTCATGGGCGCCGGCATGACCACCAACGCGGCCGTACTGGCCGGCGGTATCTCCAAAGCGCTGATCACCACAGCC
GCAGGCTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGATTCCTGCAACGTCGCATTGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGACCGTGACGTCGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7UJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844