Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH61_RS16385 Genome accession   NZ_CP117428
Coordinates   3652031..3654256 (-) Length   741 a.a.
NCBI ID   WP_305378737.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain FP69     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3647031..3659256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH61_RS16350 (PSH61_16345) murB 3647411..3648430 (-) 1020 WP_305378734.1 UDP-N-acetylmuramate dehydrogenase -
  PSH61_RS16355 (PSH61_16350) - 3648427..3648891 (-) 465 WP_034138562.1 low molecular weight protein-tyrosine-phosphatase -
  PSH61_RS16360 (PSH61_16355) kdsB 3648891..3649655 (-) 765 WP_305378735.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH61_RS16365 (PSH61_16360) - 3649652..3649837 (-) 186 WP_011060103.1 Trm112 family protein -
  PSH61_RS16370 (PSH61_16365) lpxK 3649861..3650871 (-) 1011 WP_305378736.1 tetraacyldisaccharide 4'-kinase -
  PSH61_RS16375 (PSH61_16370) - 3650871..3651299 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  PSH61_RS16380 (PSH61_16375) exbB 3651296..3651931 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH61_RS16385 (PSH61_16380) comA 3652031..3654256 (-) 2226 WP_305378737.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH61_RS16390 (PSH61_16385) - 3654391..3654906 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  PSH61_RS16395 (PSH61_16390) - 3654910..3656280 (-) 1371 WP_305378738.1 sensor histidine kinase -
  PSH61_RS16400 (PSH61_16395) - 3656267..3656983 (-) 717 WP_034098618.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80144.07 Da        Isoelectric Point: 10.9252

>NTDB_id=784862 PSH61_RS16385 WP_305378737.1 3652031..3654256(-) (comA) [Pseudomonas rhodesiae strain FP69]
MKTGMFALASGLLALVFLPALPATGWLIAMLVLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLARRIGATG
SVKDGERLAPARNAWRDGLRQRLLAVDAHGREAGLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGVWPRGWPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLGLGLPISMSAPLANLVAVPWISLVVLPLAL
LGTALLAVPFVGEGLLWLAGGALQGLFVGLGWLAGYAPAWVPAQVPLAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPRESVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRSGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AAVARGMPIRRVVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAIGGNAKSCVLQVQANGERLLLTGDIDRDAE
QALLKSSLAVPTDWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRVQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=784862 PSH61_RS16385 WP_305378737.1 3652031..3654256(-) (comA) [Pseudomonas rhodesiae strain FP69]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGTTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCCACGGGCTGGCT
GATCGCCATGCTGGTGCTGGCATTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGC
TGGGTGGCCGGGTTACCGCAACAGACCGACGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGTTGGCCCGGCGCATCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGCCCCGGCGCGCAATGCGTGGCGCGATGGCCTGCGTCAACGGCTGCTGGCCGTGGA
TGCCCACGGCCGCGAGGCGGGCCTGGCCGCTTTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATCTACGGCCTG
GTTGCCGGGTTGGCCCGTTACGGGGTTTGGCCGCGAGGTTGGCCATGGCTGCCTTGGGCGTGCGGCCTGGCCTTTGCCGC
TGCACTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTGATGGTTGGGTTGGTGCTGCTCT
GGCGTTTGCGCTTTCGCCATCTGGGCGCGTGGTGGCCGTTGCTGCTGGCCTTCAATGGGGTGCTGATCCTGGAACCCTTG
GCCAGCCTGCAGGCGGGTTTCTGGCTGTCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGCTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGTCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTGTTGTTGGGGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCACTGGCGCTG
CTGGGCACCGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGTTGCAGGGGTTATT
CGTCGGCTTGGGCTGGCTCGCCGGGTACGCGCCCGCTTGGGTACCGGCGCAGGTGCCCTTGGCGGCCTGGCTGATCAGCC
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGTTGCGCCTGCTGGGTTGGCCGATGTTGCTGCTGGCCGTG
TTCCCTCCTCGAGAATCGGTGCCCTATGGGCAGGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGCTCGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCAGTGGCCCGAGGCATGCCGATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATTGGCGGCA
ACGCGAAATCCTGCGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CAGGCGCTGCTCAAGTCGTCGCTGGCGGTGCCCACCGACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCCTGCAACGGCTGGCGCCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGTCGGGTCTATGACAGCGCCGAACAAGGCGCCGTACGCGTGCAATTA
GGGGCCTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.166

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.176

100

0.378