Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH61_RS16380 Genome accession   NZ_CP117428
Coordinates   3651296..3651931 (-) Length   211 a.a.
NCBI ID   WP_034098613.1    Uniprot ID   A0A2G0X9Z2
Organism   Pseudomonas rhodesiae strain FP69     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3646296..3656931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH61_RS16345 (PSH61_16340) - 3646677..3647348 (+) 672 WP_034098601.1 Bax inhibitor-1/YccA family protein -
  PSH61_RS16350 (PSH61_16345) murB 3647411..3648430 (-) 1020 WP_305378734.1 UDP-N-acetylmuramate dehydrogenase -
  PSH61_RS16355 (PSH61_16350) - 3648427..3648891 (-) 465 WP_034138562.1 low molecular weight protein-tyrosine-phosphatase -
  PSH61_RS16360 (PSH61_16355) kdsB 3648891..3649655 (-) 765 WP_305378735.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH61_RS16365 (PSH61_16360) - 3649652..3649837 (-) 186 WP_011060103.1 Trm112 family protein -
  PSH61_RS16370 (PSH61_16365) lpxK 3649861..3650871 (-) 1011 WP_305378736.1 tetraacyldisaccharide 4'-kinase -
  PSH61_RS16375 (PSH61_16370) - 3650871..3651299 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  PSH61_RS16380 (PSH61_16375) exbB 3651296..3651931 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH61_RS16385 (PSH61_16380) comA 3652031..3654256 (-) 2226 WP_305378737.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH61_RS16390 (PSH61_16385) - 3654391..3654906 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  PSH61_RS16395 (PSH61_16390) - 3654910..3656280 (-) 1371 WP_305378738.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.95 Da        Isoelectric Point: 6.8765

>NTDB_id=784861 PSH61_RS16380 WP_034098613.1 3651296..3651931(-) (exbB) [Pseudomonas rhodesiae strain FP69]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784861 PSH61_RS16380 WP_034098613.1 3651296..3651931(-) (exbB) [Pseudomonas rhodesiae strain FP69]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCGCTCGGCATTGTTGC
CGAACGCCTGTGGACCTTGCGTGCCAGTCGTGTCACCCCTGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAACTGGACAAGGAAAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACCGGCATGAGCGCTAACGCGGCCGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATTACCACGGCG
GCGGGCTTGATGGTGGGGATTCCATCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTTGTCGAGGTGGTGCAGGGGGATCGTGACGTGGATCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0X9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853