Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH80_RS19410 Genome accession   NZ_CP117427
Coordinates   4294294..4296549 (-) Length   751 a.a.
NCBI ID   WP_120733920.1    Uniprot ID   -
Organism   Pseudomonas sp. FP818     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4289294..4301549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH80_RS19375 (PSH80_19370) murB 4289693..4290712 (-) 1020 WP_252117094.1 UDP-N-acetylmuramate dehydrogenase -
  PSH80_RS19380 (PSH80_19375) - 4290709..4291173 (-) 465 WP_057960405.1 low molecular weight protein-tyrosine-phosphatase -
  PSH80_RS19385 (PSH80_19380) kdsB 4291173..4291937 (-) 765 WP_057960406.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH80_RS19390 (PSH80_19385) - 4291934..4292119 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH80_RS27440 - 4292144..4292437 (-) 294 WP_370693706.1 tetraacyldisaccharide 4'-kinase -
  PSH80_RS19395 (PSH80_19390) lpxK 4292445..4293158 (-) 714 Protein_3835 tetraacyldisaccharide 4'-kinase -
  PSH80_RS19400 (PSH80_19395) - 4293158..4293586 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  PSH80_RS19405 (PSH80_19400) exbB 4293583..4294218 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH80_RS19410 (PSH80_19405) comA 4294294..4296549 (-) 2256 WP_120733920.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH80_RS19415 (PSH80_19410) - 4296686..4297201 (+) 516 WP_057960409.1 DUF2062 domain-containing protein -
  PSH80_RS19420 (PSH80_19415) - 4297421..4300174 (+) 2754 WP_198799624.1 response regulator -
  PSH80_RS19425 (PSH80_19420) - 4300286..4301275 (+) 990 WP_115128759.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81855.32 Da        Isoelectric Point: 10.9020

>NTDB_id=784837 PSH80_RS19410 WP_120733920.1 4294294..4296549(-) (comA) [Pseudomonas sp. FP818]
MRTGMFALALGLLALRLLPVLPPVGWLLVLPVVALMMLPFRTYPLAFFLLGLAWACFSAQRALDDRLMPALDGQTRWLEG
RVSGLPQQSGGVVRFELSDSRSRQDRLPQRIRVSWQGGPPVRSGERWRLAVTLKRPSGLLNFQGFDQEAWLLAQRVGATG
SVKDGQRLAPARHAWRDGVRQQLLAVDARGREAGLAALVLGDGSGLAAEDWRILQDTGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGCWPRRLPWLPWACGLAFAAALAYGLLAGFAVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLLLEPL
ASLQPGFWLSFAAVAVLLLAFSGRLGPWRAWQAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLAVPWLGSGLLWLAGGALDWLFKALAWLAGHVPAWIPAEVPVGYWLLSLLGAVLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRVGDFDLGERVVLPALRKLGVGQVDLMLLSHADADHAGGA
AAVARGLPVLRVVGGETQGLPAFLGTQACISGEQWEWDGVVFQLWQWADARNGNAKSCVLLVQANGERLLLTGDIDREAE
RALLATPLAVATDWLQVPHHGSRSSSSWPFVQQLAPKAVLISRGRGNGFGHPHPQVVARYQYLRSTLYDSAEQGAVRLRL
GAFEAPVMARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=784837 PSH80_RS19410 WP_120733920.1 4294294..4296549(-) (comA) [Pseudomonas sp. FP818]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCCGTCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGATGCTGCCGTTTCGTACTTATCCGCTGGCGTTTTTCCTGTTGGGCCTGGCGT
GGGCCTGTTTCAGCGCGCAACGGGCGCTTGACGACCGGCTCATGCCCGCGCTGGACGGCCAGACCCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTGCCGCAGCAGAGTGGTGGGGTGGTGCGCTTCGAACTGAGCGACAGCCGGTCACGCCAGGACCGGCT
GCCCCAGCGCATCCGTGTGAGCTGGCAGGGCGGCCCGCCCGTGCGCAGTGGTGAGCGCTGGCGTTTGGCCGTGACCCTCA
AGCGACCCTCCGGCCTGTTGAATTTCCAGGGCTTCGATCAAGAGGCCTGGCTGTTGGCCCAGCGTGTGGGGGCGACGGGG
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGACATGCCTGGCGCGATGGGGTCCGCCAGCAGCTATTGGCGGTAGA
CGCCCGGGGGCGTGAAGCCGGGCTGGCCGCACTGGTGCTGGGCGATGGCTCCGGCTTGGCCGCCGAGGATTGGCGCATTT
TGCAGGACACCGGCACCGTGCATCTATTGGTCATTTCCGGCCAGCATATCGGCCTGTTGTCGGGGTTGATCTATGCCTTG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCAGGCGTTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTGCCGC
AGCGCTGGCCTATGGCTTGCTCGCCGGCTTTGCCGTGCCAGTGCAGCGGGCCTGTGTGATGGTGGGGCTGGTGTTGCTGT
GGCGCCTGCGGTTTCGCCACCTGGGGATCTGGTGGCCACTGCTGCTGGCCCTGAATGCGGTGCTGCTCCTCGAACCCCTG
GCCAGCCTGCAACCGGGTTTCTGGCTGTCATTTGCCGCCGTGGCCGTGTTGCTGCTGGCCTTCAGCGGCCGCCTGGGGCC
CTGGCGGGCGTGGCAGGCCTGGACCCGTGCCCAATGGCTGATCGCGATTGGGCTGTTTCCGCTGCTACTGATCCTCGGTT
TGCCGATCAGCTTGAGTGCGCCGCTGGCCAATCTGTTTGCAGTGCCGTGGATCAGCCTGTTGGTGTTGCCGCTGGCGCTG
GCGGGCACGCTGTTGCTGGCGGTGCCATGGCTGGGCAGTGGCCTGTTGTGGCTGGCGGGGGGGGCGCTGGATTGGCTGTT
CAAGGCCCTGGCCTGGCTGGCCGGGCACGTGCCCGCCTGGATACCGGCCGAGGTGCCTGTGGGCTACTGGTTGCTCAGTC
TGCTGGGCGCGGTGCTGTTATTGATGCCCAAGGGCATTCCCTTTCGCCTGCTGGGTTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGTGAGTCGATCCCGTTGGGCCAGGTGGCGGTGGAGCAACTGGATGTCGGCCAGGGCTTGTCGATCGTGTT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGGCCACGGGTGGGGGATTTCGATCTCGGCGAGCGCGTGGTATTGC
CGGCGCTGCGCAAGCTGGGGGTTGGCCAGGTGGACTTGATGCTGCTCAGCCATGCCGACGCCGATCATGCTGGTGGCGCG
GCGGCGGTGGCCCGTGGGTTACCCGTCCTGCGCGTGGTGGGCGGGGAAACCCAGGGGTTGCCGGCGTTCCTCGGCACTCA
GGCCTGTATCAGCGGTGAGCAGTGGGAGTGGGACGGCGTGGTGTTCCAGCTGTGGCAATGGGCAGATGCCCGCAACGGTA
ACGCGAAGTCGTGCGTGCTGCTGGTCCAGGCCAATGGCGAGCGGTTGCTGCTGACCGGCGATATCGACCGCGAGGCCGAG
CGGGCCTTGCTGGCCACGCCCTTGGCGGTCGCCACGGATTGGCTGCAAGTGCCCCATCATGGCAGCCGCAGTTCCTCGTC
CTGGCCGTTTGTCCAGCAACTGGCCCCCAAGGCGGTGCTGATCTCCCGTGGGCGAGGCAATGGTTTCGGTCATCCGCACC
CGCAAGTGGTGGCGCGTTACCAGTATTTGCGCAGCACCCTTTATGACAGCGCCGAACAGGGCGCGGTGCGTCTGCGCCTG
GGGGCTTTCGAGGCGCCGGTCATGGCACGCAGCCAGCGCCGGTTCTGGCGCGCGCCTGTCATCGACAGTTACCAAAGGCC
GGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.585

95.606

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.347

100

0.366