Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH80_RS19405 Genome accession   NZ_CP117427
Coordinates   4293583..4294218 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas sp. FP818     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4288583..4299218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH80_RS19370 (PSH80_19365) - 4288978..4289448 (-) 471 WP_057960403.1 (2Fe-2S)-binding protein -
  PSH80_RS19375 (PSH80_19370) murB 4289693..4290712 (-) 1020 WP_252117094.1 UDP-N-acetylmuramate dehydrogenase -
  PSH80_RS19380 (PSH80_19375) - 4290709..4291173 (-) 465 WP_057960405.1 low molecular weight protein-tyrosine-phosphatase -
  PSH80_RS19385 (PSH80_19380) kdsB 4291173..4291937 (-) 765 WP_057960406.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH80_RS19390 (PSH80_19385) - 4291934..4292119 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH80_RS27440 - 4292144..4292437 (-) 294 WP_370693706.1 tetraacyldisaccharide 4'-kinase -
  PSH80_RS19395 (PSH80_19390) lpxK 4292445..4293158 (-) 714 Protein_3835 tetraacyldisaccharide 4'-kinase -
  PSH80_RS19400 (PSH80_19395) - 4293158..4293586 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  PSH80_RS19405 (PSH80_19400) exbB 4293583..4294218 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH80_RS19410 (PSH80_19405) comA 4294294..4296549 (-) 2256 WP_120733920.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH80_RS19415 (PSH80_19410) - 4296686..4297201 (+) 516 WP_057960409.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=784836 PSH80_RS19405 WP_029299724.1 4293583..4294218(-) (exbB) [Pseudomonas sp. FP818]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784836 PSH80_RS19405 WP_029299724.1 4293583..4294218(-) (exbB) [Pseudomonas sp. FP818]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATTGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTGTAACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGGGCCAATTCCCCTCTGGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCCGCCCGGGTAATCCACGAACTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCGGCAATGGCGCCATTGCTGGGCTTGCTCGGCACCGTGCTGGGCATGATTGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGTATTTCCAAGGCCCTGATCACCACGGCG
GCGGGCCTGATGGTGGGGATCCCTGCGGTGTTTTTCCACCGATTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGATGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867