Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q3V78_RS06315 Genome accession   NZ_CP130538
Coordinates   1256721..1258781 (+) Length   686 a.a.
NCBI ID   WP_047213386.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA11-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251721..1263781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS06290 rpe 1252191..1252835 (+) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -
  Q3V78_RS06295 - 1252842..1253483 (+) 642 WP_000547905.1 thiamine diphosphokinase -
  Q3V78_RS06300 rpmB 1253865..1254053 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  Q3V78_RS06305 - 1254496..1254870 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  Q3V78_RS06310 fakA 1254885..1256531 (+) 1647 WP_000623911.1 fatty acid kinase catalytic subunit FakA -
  Q3V78_RS06315 recG 1256721..1258781 (+) 2061 WP_047213386.1 ATP-dependent DNA helicase RecG Machinery gene
  Q3V78_RS06320 fapR 1258984..1259556 (+) 573 WP_001548538.1 transcription factor FapR -
  Q3V78_RS06325 plsX 1259561..1260547 (+) 987 WP_303262007.1 phosphate acyltransferase PlsX -
  Q3V78_RS06330 fabD 1260540..1261466 (+) 927 WP_117197286.1 ACP S-malonyltransferase -
  Q3V78_RS06335 fabG 1261459..1262193 (+) 735 WP_000167264.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  Q3V78_RS06340 - 1262436..1262669 (+) 234 WP_000426914.1 acyl carrier protein -
  Q3V78_RS06345 rnc 1262785..1263516 (+) 732 WP_000043237.1 ribonuclease III -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78353.88 Da        Isoelectric Point: 6.1562

>NTDB_id=784832 Q3V78_RS06315 WP_047213386.1 1256721..1258781(+) (recG) [Staphylococcus aureus strain SA11-SX]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVRQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=784832 Q3V78_RS06315 WP_047213386.1 1256721..1258781(+) (recG) [Staphylococcus aureus strain SA11-SX]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACCAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACTGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAGACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCATTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATTGCTTTATTTGGAGATTCTATGAACGTTGCGTTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATTCTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCATTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCACTTATAGAAAGTTCTGAGCATCTCGAAGACGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
AGTTTCCCGTGTAGGATTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAAGTCATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTGGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCTCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGCAGTTTTGACTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-175)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

DEAD/DEAH box helicase (DEAD)

(267-422)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.223

97.23

0.517
  recG/mmsA Streptococcus pneumoniae R6

50.233

94.023

0.472
  recG/mmsA Streptococcus pneumoniae R36A

50.233

94.023

0.472
  recG Neisseria meningitidis strain C311

40.179

97.959

0.394