Detailed information NTG0784790

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH84_RS24230
• Genome accession: NZ_CP117425
• Coordinates: 5461585..5462931 (+)
• Length: 448 a.a.
• NCBI ID: WP_305468544.1
• Uniprot ID: -
• Organism: Pseudomonas beijingensis strain FP830
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5456585..5467931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH84_RS24205 (PSH84_24200)	pgeF	5456799..5457524 (-)	726	WP_305468541.1	peptidoglycan editing factor PgeF	-
PSH84_RS24210 (PSH84_24205)	rluD	5457521..5458483 (-)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH84_RS24215 (PSH84_24210)	-	5458634..5459650 (+)	1017	WP_058546854.1	outer membrane protein assembly factor BamD	-
PSH84_RS24220 (PSH84_24215)	-	5459776..5460009 (+)	234	WP_122564926.1	PP0621 family protein	-
PSH84_RS24225 (PSH84_24220)	pilS	5459999..5461588 (+)	1590	WP_305481920.1	nitrogen regulation protein NR(II)	Regulator
PSH84_RS24230 (PSH84_24225)	pilR	5461585..5462931 (+)	1347	WP_305468544.1	sigma-54 dependent transcriptional regulator	Regulator
PSH84_RS24235 (PSH84_24230)	-	5463107..5463472 (-)	366	WP_305481921.1	DUF6124 family protein	-
PSH84_RS24240 (PSH84_24235)	-	5464556..5464720 (-)	165	WP_305471304.1	hypothetical protein	-
PSH84_RS24245 (PSH84_24240)	thiO	5464958..5466058 (-)	1101	WP_305481922.1	glycine oxidase ThiO	-
PSH84_RS24250 (PSH84_24245)	-	5466116..5466517 (-)	402	WP_305468548.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49959.38 Da
• Isoelectric Point: 5.9869

>NTDB_id=784790 PSH84_RS24230 WP_305468544.1 5461585..5462931(+) (pilR) [Pseudomonas beijingensis strain FP830]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPAVATPTSTIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPAVKLHPQALAALQNYRFPGNVRELENMLERAYTLCEQQLIEADDLRLAEGNNAGEAGKPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=784790 PSH84_RS24230 WP_305468544.1 5461585..5462931(+) (pilR) [Pseudomonas beijingensis strain FP830]
TTGAACAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGAGATGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGTACTGGCTTGGAACTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCTTTCGATTTCCTGACCAA
GCCGGTCGACCTGGGGCGGCTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGCCAGCCGTCGCCACACCGACCAGCACCA
TCGAGCGATGCCTTCTGGGCGACTCGCCGCCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGTGGGGAGTCGGGTTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAAGGCCCCCGTGCCAA
CCAGGGCTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAACTGATGGAAAGCGAGTTCTTTGGCCATCGCAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGACTGTTCCAGGCCGCCCATGGCGGGACTCTGTTCCTTGATGAAGTGGCC
GACCTGCCTCTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGTGCCGTGGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCATAAGGATCTGGACGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATCTATATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCCTTGCGCGAACGCCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGCTTGGCGGCCAACACCGGCAGCCCCGCAGTAAAACTCCATCCCCAGGCCCTGGCCGCGCTGCA
AAACTACCGCTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTGTGCGAACAACAACTGA
TCGAAGCCGACGACCTGCGCCTGGCCGAAGGCAATAATGCCGGCGAGGCGGGCAAACCCGATTTGATGCAGGTCGACAAT
CTGGAGGACTACCTGGAAGACGTCGAGCGTAAGCTGATCCTTCAAGCACTGGAGGAAACCCGCTGGAACCGTACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAACTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.604	99.107	0.779
pilR	Acinetobacter baumannii strain A118	49.237	100	0.504