Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH84_RS24225 Genome accession   NZ_CP117425
Coordinates   5459999..5461588 (+) Length   529 a.a.
NCBI ID   WP_305481920.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP830     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5454999..5466588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH84_RS24205 (PSH84_24200) pgeF 5456799..5457524 (-) 726 WP_305468541.1 peptidoglycan editing factor PgeF -
  PSH84_RS24210 (PSH84_24205) rluD 5457521..5458483 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH84_RS24215 (PSH84_24210) - 5458634..5459650 (+) 1017 WP_058546854.1 outer membrane protein assembly factor BamD -
  PSH84_RS24220 (PSH84_24215) - 5459776..5460009 (+) 234 WP_122564926.1 PP0621 family protein -
  PSH84_RS24225 (PSH84_24220) pilS 5459999..5461588 (+) 1590 WP_305481920.1 nitrogen regulation protein NR(II) Regulator
  PSH84_RS24230 (PSH84_24225) pilR 5461585..5462931 (+) 1347 WP_305468544.1 sigma-54 dependent transcriptional regulator Regulator
  PSH84_RS24235 (PSH84_24230) - 5463107..5463472 (-) 366 WP_305481921.1 DUF6124 family protein -
  PSH84_RS24240 (PSH84_24235) - 5464556..5464720 (-) 165 WP_305471304.1 hypothetical protein -
  PSH84_RS24245 (PSH84_24240) thiO 5464958..5466058 (-) 1101 WP_305481922.1 glycine oxidase ThiO -
  PSH84_RS24250 (PSH84_24245) - 5466116..5466517 (-) 402 WP_305468548.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58819.57 Da        Isoelectric Point: 7.9831

>NTDB_id=784789 PSH84_RS24225 WP_305481920.1 5459999..5461588(+) (pilS) [Pseudomonas beijingensis strain FP830]
MSAEASSPRVKQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDHLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLIIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVVGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQQLD
DYSTALVERLQLWRNNPSLRPSSLTVTGTGLALQPSFIALGHNDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QRLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIAPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=784789 PSH84_RS24225 WP_305481920.1 5459999..5461588(+) (pilS) [Pseudomonas beijingensis strain FP830]
GTGAGCGCTGAGGCCTCAAGCCCACGCGTCAAACAGACGCAGCGCCTGCTGCGCCTCTATCACCTGTACCGCCTGAGTAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACCACCTGCTGCGCA
GCGGTAGCTGGTTGTACCTGGTACTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACCCGACGCCCTGCCCGACTGTTC
GGCCTGGCCCTCACCGACGTGCTCTTGCTTTCATGGCTGTTTTTCGCAGCCGGCGGTGTGCCCAGTGCCATCGGCAACCT
GATCATCGTCTCGGTGGCCATCGGTAACACGCTGTTGCGCGGCAGGATCGGCCTGTTGATCGCGGCCGTCGCCACCCTCG
GCATCGTCGGTTCGAGTTTTTTTCTTGGCTTGAGCGACTCGAACCGTCCCAGCAGCTATTTGCAGGCCGGTACCCTCGGG
GCGCTGTGTTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGCTTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGGTCGGCCTGGAAGCGCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GTGAGCGTCGGGTCCAGTTGGCCAACGAAAGCGCATTGAATCTGCTGGGCATGCACGATCTGGTCGGCCAGCAGCTCGAC
GATTACTCCACTGCCCTGGTCGAACGCCTGCAATTATGGCGAAACAACCCCAGCCTGCGCCCGTCCAGCCTGACCGTTAC
GGGCACGGGCCTGGCCCTGCAACCGAGCTTCATCGCCCTGGGCCATAACGACCAGCATCAAATCCTGGTGTTCCTCGAAG
ACCTGGCCCAGGTTGCCCAGCATGCCCAGCAGCTCAAGCTCGCCTCCCTGGGGCGCCTGACCGCCGGTATCGCTCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCAGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTTCTGCAGCTGTCTCGTCGCCAGC
AAACCACACCCCAGCGTCTCGACCTGCGTACCTGGCTCGACCAATTCGTCCGGCAGGCCCGCGAAAGCATGGCCGAACAC
CAGCGCTTGCACCTGAGCATCGACCCGGGGGACTACACCACGCTGATGGACCCCGACCAGCTCACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCAATGGCCCATGAGCAGGCCGAGGCCTGGTTGAAACTGTTCATCGCCCCCC
ACAGCCAGCTGTCGACCTTGGACATCATCGACAACGGCCCCGGTGTAACGCCCGAGCAGCAGGCGCATTTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.659

99.811

0.595