Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH63_RS20890 Genome accession   NZ_CP117424
Coordinates   4566324..4568549 (-) Length   741 a.a.
NCBI ID   WP_236645988.1    Uniprot ID   -
Organism   Pseudomonas sp. FP833     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4561324..4573549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH63_RS20855 (PSH63_20850) murB 4561693..4562712 (-) 1020 WP_024076127.1 UDP-N-acetylmuramate dehydrogenase -
  PSH63_RS20860 (PSH63_20855) - 4562709..4563173 (-) 465 WP_024076128.1 low molecular weight protein-tyrosine-phosphatase -
  PSH63_RS20865 (PSH63_20860) kdsB 4563173..4563937 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH63_RS20870 (PSH63_20865) - 4563934..4564119 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH63_RS20875 (PSH63_20870) lpxK 4564144..4565154 (-) 1011 WP_024076130.1 tetraacyldisaccharide 4'-kinase -
  PSH63_RS20880 (PSH63_20875) - 4565154..4565582 (-) 429 WP_024076131.1 biopolymer transporter ExbD -
  PSH63_RS20885 (PSH63_20880) exbB 4565579..4566214 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH63_RS20890 (PSH63_20885) comA 4566324..4568549 (-) 2226 WP_236645988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH63_RS20895 (PSH63_20890) - 4568685..4569200 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  PSH63_RS20900 (PSH63_20895) - 4569197..4570573 (-) 1377 WP_024076135.1 sensor histidine kinase -
  PSH63_RS20905 (PSH63_20900) - 4570560..4571288 (-) 729 WP_024076136.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80207.21 Da        Isoelectric Point: 10.5928

>NTDB_id=784758 PSH63_RS20890 WP_236645988.1 4566324..4568549(-) (comA) [Pseudomonas sp. FP833]
MKTGMFALALGLLALRFLPALPPAAGVLAMCVLALMLLPFRSHPLAFFLLGLSWACISAQWALDDRLQPALDGQTRWVEG
RVTGLPQQTSTGVRFELTDGRSPKARLPKRIRVAWHGGPPVRSGERWRLAVTLKRPSGVLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VTLLARYGCWPPAWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLILEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSAWQAWTRPQWLIAIGLFPLLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
LGTVLVAVPFVGEGLLWLAGGALDGLFRALALLAGHLPAWIPAEVPMGYWLVSVAGAVLLLLPRGVPLRPMGWPMLLLAV
FPPREPVPHGQVEVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEVDLGARVVLPSLRKLGVEVLDMMLLSHADADHAGGA
AAIARGLPIRRVVGGETRGLPAFLGTEPCVSGEQWEWDGVSFELWQWPDAISGNPKSCVLQVQAKGERMLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSWPFVQRLAPTAVLISRGRGNAFGHPHPQVMERYRALGTQVYDSAEQGAVRVQL
GAFLPPTVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=784758 PSH63_RS20890 WP_236645988.1 4566324..4568549(-) (comA) [Pseudomonas sp. FP833]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGCCTGCCGCGGGGGT
GTTGGCCATGTGCGTGCTGGCGTTGATGCTGCTGCCGTTTCGCAGCCACCCGCTGGCGTTCTTTCTGCTGGGCTTGAGTT
GGGCGTGCATCAGCGCGCAGTGGGCGCTGGATGACCGCCTGCAACCGGCCCTCGATGGCCAGACGCGCTGGGTGGAGGGC
CGGGTGACCGGGTTGCCGCAGCAGACCAGCACGGGCGTGCGTTTCGAACTGACCGACGGCCGGTCCCCCAAGGCGCGTTT
ACCCAAGCGTATTCGCGTGGCCTGGCATGGCGGGCCACCGGTGCGCAGTGGGGAGCGCTGGCGCTTGGCCGTGACGCTCA
AGCGGCCATCCGGCGTGCTCAACTTCCATGGCTTTGATCATGAGGCCTGGCTGTTGGCCCAGCGCATCGGTGCCACCGGC
TCGGTGAAAGACGGTGAGCGTTTGGCGCCGGCGCGCAACGCTTGGCGCGACGCGGTCCGCCAACGACTGATGGCTGTGGA
TGCCCAAGGCCGCGAGGCCGGGCTGGCCGCCTTGGTGCTGGGCGATGGCTCGGGGCTGGCCGCCGAGGATTGGCGTGTGT
TGCAGGACACCGGTACGGTGCACCTGCTGGTGATATCCGGCCAGCATATTGGCTTGCTGGCGGGGTTGATCTATGGGCTG
GTCACACTGCTGGCGCGCTACGGTTGCTGGCCCCCCGCCTGGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCATTTGCTGC
CGCGCTGGGCTACGGCCTGCTTGCGGGGTTCGGAGTGCCGGTGCAAAGGGCCTGCGTGATGGTGGGGCTGGTATTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGCGCCTGGTGGCCATTGTTACTGGCATTTAATGGCGTGCTGATCCTTGAGCCTTTG
GCCAGCCTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCTGTCGCGGTATTGGTGCTGGCATTCGGTGGGCGTTTGGGGCC
GTGGAGCGCCTGGCAAGCCTGGACCCGTCCCCAGTGGTTGATCGCGATCGGCCTGTTTCCGCTGTTGCTGGTGCTGGGGT
TGCCCATCAGTCTCAGCGCGCCGTTGGCTAACCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTGTTGCCCTTGGCATTG
TTGGGCACTGTGCTGGTGGCGGTGCCCTTTGTGGGGGAGGGGCTGTTATGGCTGGCGGGTGGGGCGCTGGATGGGTTGTT
CCGCGCCTTGGCGTTGCTGGCCGGGCACCTGCCGGCATGGATACCGGCCGAGGTGCCGATGGGCTATTGGCTGGTGAGCG
TCGCGGGTGCAGTGTTACTGCTGTTGCCCAGGGGCGTACCGTTACGACCGATGGGGTGGCCGATGCTGTTGTTGGCGGTG
TTTCCGCCGCGGGAGCCGGTGCCCCATGGGCAGGTTGAGGTGGTGCAACTGGATGTCGGTCAGGGGCAGGCGCTGGTGCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCGGGTCCGCGCTCGGGGGAAGTCGATCTTGGCGCGCGTGTGGTATTGC
CGTCATTGAGAAAACTCGGGGTGGAGGTATTGGACATGATGCTGCTCAGCCACGCCGACGCCGACCATGCCGGCGGTGCG
GCGGCTATTGCCCGTGGGCTGCCGATCAGACGGGTAGTCGGAGGCGAAACACGAGGCTTGCCGGCGTTTCTCGGCACTGA
ACCCTGTGTCAGCGGTGAACAGTGGGAGTGGGATGGGGTGTCATTTGAACTGTGGCAGTGGCCAGATGCTATTAGTGGTA
ACCCGAAATCCTGTGTATTACAGGTCCAGGCCAAGGGTGAGCGCATGTTGCTCACGGGGGATATTGATCGCGCCGCCGAG
CGGGCTTTTCTTGCCTCGCCCTTGGCTGTGCGGACCGATTGGTTGCAGGCGCCCCATCATGGCAGCCGCAGTTCTTCGTC
CTGGCCCTTTGTGCAGCGGCTGGCGCCCACGGCGGTGCTGATTTCCAGGGGGCGAGGCAACGCGTTCGGCCACCCCCACC
CCCAGGTGATGGAACGCTACCGGGCACTGGGTACCCAGGTTTATGACAGTGCTGAACAAGGGGCTGTGCGTGTGCAATTG
GGGGCGTTCCTGCCACCGACTGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.031

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.496

100

0.377