Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH63_RS20885 Genome accession   NZ_CP117424
Coordinates   4565579..4566214 (-) Length   211 a.a.
NCBI ID   WP_024076132.1    Uniprot ID   A0AB36XW30
Organism   Pseudomonas sp. FP833     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4560579..4571214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH63_RS20850 (PSH63_20845) - 4560947..4561618 (+) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -
  PSH63_RS20855 (PSH63_20850) murB 4561693..4562712 (-) 1020 WP_024076127.1 UDP-N-acetylmuramate dehydrogenase -
  PSH63_RS20860 (PSH63_20855) - 4562709..4563173 (-) 465 WP_024076128.1 low molecular weight protein-tyrosine-phosphatase -
  PSH63_RS20865 (PSH63_20860) kdsB 4563173..4563937 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH63_RS20870 (PSH63_20865) - 4563934..4564119 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH63_RS20875 (PSH63_20870) lpxK 4564144..4565154 (-) 1011 WP_024076130.1 tetraacyldisaccharide 4'-kinase -
  PSH63_RS20880 (PSH63_20875) - 4565154..4565582 (-) 429 WP_024076131.1 biopolymer transporter ExbD -
  PSH63_RS20885 (PSH63_20880) exbB 4565579..4566214 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH63_RS20890 (PSH63_20885) comA 4566324..4568549 (-) 2226 WP_236645988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH63_RS20895 (PSH63_20890) - 4568685..4569200 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  PSH63_RS20900 (PSH63_20895) - 4569197..4570573 (-) 1377 WP_024076135.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22907.05 Da        Isoelectric Point: 7.4245

>NTDB_id=784757 PSH63_RS20885 WP_024076132.1 4565579..4566214(-) (exbB) [Pseudomonas sp. FP833]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784757 PSH63_RS20885 WP_024076132.1 4565579..4566214(-) (exbB) [Pseudomonas sp. FP833]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGCAAAAGCTCAAGGAGCTGCGCGCCCATTCACCGCTGGGTGAAATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCTGCCCGCGTCATCCATGAGCTGGAGCGCTACAT
CAACGCCCTGGGCACCATCGCGGCCATGGCGCCGTTGCTCGGCCTGCTCGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCCTTCACGGGCTCCGGCATGACCACCAACGCTGCCGTGCTGGCCGGCGGTATTTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCATCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858