Detailed information NTG0078468

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: M2038_RS08585
• Genome accession: NZ_AP025693
• Coordinates: 1757881..1758483 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain JICS127
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1752881..1763483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2038_RS08565 (JICS127ACC_1659)	yajC	1754377..1754637 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
M2038_RS08570 (JICS127ACC_1660)	tgt	1754656..1755795 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
M2038_RS08575 (JICS127ACC_1661)	queA	1755818..1756843 (-)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
M2038_RS08580 (JICS127ACC_1662)	ruvB	1756845..1757849 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
M2038_RS08585 (JICS127ACC_1663)	ruvA	1757881..1758483 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
M2038_RS08590 (JICS127ACC_1664)	-	1758497..1758952 (-)	456	WP_000368902.1	ACT domain-containing protein	-
M2038_RS08595 (JICS127ACC_1665)	obgE	1758965..1760257 (-)	1293	WP_000496100.1	GTPase ObgE	-
M2038_RS08600 (JICS127ACC_1666)	rpmA	1760612..1760896 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
M2038_RS08605 (JICS127ACC_1667)	-	1760908..1761228 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
M2038_RS08610 (JICS127ACC_1668)	rplU	1761234..1761542 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
M2038_RS08615 (JICS127ACC_1669)	mreD	1761709..1762239 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
M2038_RS08620 (JICS127ACC_1670)	mreC	1762239..1763081 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
M2038_RS08625	-	1763281..1763400 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=78468 M2038_RS08585 WP_000271547.1 1757881..1758483(-) (ruvA) [Staphylococcus aureus strain JICS127]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=78468 M2038_RS08585 WP_000271547.1 1757881..1758483(-) (ruvA) [Staphylococcus aureus strain JICS127]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425