Detailed information NTG0784646

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: IL310_RS09725
• Genome accession: NZ_CP117409
• Coordinates: 1522645..1523967 (+)
• Length: 440 a.a.
• NCBI ID: WP_201247957.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain LB7
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1517645..1528967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL310_RS09700 (IL310_09705)	glyQ	1518161..1519114 (-)	954	WP_003130667.1	glycine--tRNA ligase subunit alpha	-
IL310_RS09705 (IL310_09710)	-	1519400..1520146 (-)	747	WP_201247954.1	bifunctional metallophosphatase/5'-nucleotidase	-
IL310_RS09710 (IL310_09715)	-	1520261..1521280 (-)	1020	WP_201247955.1	DUF475 domain-containing protein	-
IL310_RS09715 (IL310_09720)	-	1521328..1521825 (-)	498	WP_003130662.1	VanZ family protein	-
IL310_RS09720 (IL310_09725)	-	1521959..1522588 (-)	630	WP_201247956.1	YigZ family protein	-
IL310_RS09725 (IL310_09730)	comFA	1522645..1523967 (+)	1323	WP_201247957.1	DEAD/DEAH box helicase	Machinery gene
IL310_RS09730 (IL310_09735)	comFC	1524210..1524614 (+)	405	WP_003130657.1	ComF family protein	Machinery gene
IL310_RS09735 (IL310_09740)	-	1524648..1525226 (-)	579	WP_021722515.1	nucleotidyltransferase family protein	-
IL310_RS09740 (IL310_09745)	-	1525240..1525695 (-)	456	WP_003130653.1	diacylglycerol kinase	-
IL310_RS09745 (IL310_09750)	ybeY	1525679..1526167 (-)	489	WP_003130652.1	rRNA maturation RNase YbeY	-
IL310_RS09750 (IL310_09755)	-	1526319..1526798 (-)	480	WP_201247958.1	NUDIX hydrolase	-
IL310_RS09755 (IL310_09760)	-	1526856..1527809 (-)	954	WP_340641689.1	PhoH family protein	-

Sequence

Protein

• Length: 440 a.a.
• Molecular weight: 50214.76 Da
• Isoelectric Point: 10.1555

>NTDB_id=784646 IL310_RS09725 WP_201247957.1 1522645..1523967(+) (comFA) [Lactococcus lactis strain LB7]
MSTNQEKLFGRLLLKNNILQLIKSTDKISVSKIFSNFLLEAKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDNYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYF
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNLPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKITSVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide

• Length: 1323 bp

>NTDB_id=784646 IL310_RS09725 WP_201247957.1 1522645..1523967(+) (comFA) [Lactococcus lactis strain LB7]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATAATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAGCGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCGGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTCTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAGC
GGTGGGGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAACTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATTTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATCTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTACTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACTTCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAACCAACTGGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (300-403)

• Type III restriction enzyme, res subunit (ResIII) (114-233)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	74.25	90.909	0.675
comFA/cflA	Streptococcus mitis SK321	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae Rx1	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae D39	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae R6	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae TIGR4	52.01	90.455	0.47
comFA/cflA	Streptococcus mitis NCTC 12261	51.256	90.455	0.464
comFA	Bacillus subtilis subsp. subtilis str. 168	37.277	100	0.38