Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   Q3V56_RS08155 Genome accession   NZ_CP130518
Coordinates   1697675..1698277 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain SA25-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1692675..1703277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V56_RS08135 yajC 1694171..1694431 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  Q3V56_RS08140 tgt 1694450..1695589 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  Q3V56_RS08145 queA 1695612..1696637 (-) 1026 WP_001019166.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  Q3V56_RS08150 ruvB 1696639..1697643 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q3V56_RS08155 ruvA 1697675..1698277 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  Q3V56_RS08160 - 1698291..1698746 (-) 456 WP_000368900.1 ACT domain-containing protein -
  Q3V56_RS08165 obgE 1698759..1700051 (-) 1293 WP_000496105.1 GTPase ObgE -
  Q3V56_RS08170 rpmA 1700673..1700957 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  Q3V56_RS08175 - 1700969..1701289 (-) 321 WP_000633690.1 ribosomal-processing cysteine protease Prp -
  Q3V56_RS08180 rplU 1701295..1701603 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  Q3V56_RS08185 mreD 1701839..1702369 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  Q3V56_RS08190 mreC 1702369..1703211 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=783602 Q3V56_RS08155 WP_000271547.1 1697675..1698277(-) (ruvA) [Staphylococcus aureus strain SA25-SX]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=783602 Q3V56_RS08155 WP_000271547.1 1697675..1698277(-) (ruvA) [Staphylococcus aureus strain SA25-SX]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425