Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   MTP06_RS07500 Genome accession   NZ_AP025692
Coordinates   1786077..1787150 (+) Length   357 a.a.
NCBI ID   WP_008405566.1    Uniprot ID   A0A126Y8M1
Organism   Streptomyces sp. PLM4     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781077..1792150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP06_RS07490 (MTP06_15080) - 1782592..1783854 (+) 1263 WP_127452405.1 FAD-dependent oxidoreductase -
  MTP06_RS07495 (MTP06_15090) dnaG 1783975..1785879 (+) 1905 WP_248494169.1 DNA primase -
  MTP06_RS07500 (MTP06_15100) rpoS 1786077..1787150 (+) 1074 WP_008405566.1 RNA polymerase sigma factor Regulator
  MTP06_RS07505 (MTP06_15110) - 1787167..1787382 (-) 216 WP_003947903.1 hypothetical protein -
  MTP06_RS07510 (MTP06_15120) rcrQ 1787473..1789389 (-) 1917 WP_015507929.1 ABC transporter ATP-binding protein Regulator
  MTP06_RS07515 (MTP06_15130) rcrP 1789389..1791122 (-) 1734 WP_015507928.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38792.42 Da        Isoelectric Point: 10.3526

>NTDB_id=78356 MTP06_RS07500 WP_008405566.1 1786077..1787150(+) (rpoS) [Streptomyces sp. PLM4]
MQTRPPRSAPTAPPAVLAPAVPTPRRSPQRAPAGGAGTGPQGAGGRVPAGSEQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAGGCADAGLARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=78356 MTP06_RS07500 WP_008405566.1 1786077..1787150(+) (rpoS) [Streptomyces sp. PLM4]
GTGCAGACCAGGCCCCCTCGCTCCGCCCCCACCGCTCCGCCCGCGGTCCTCGCCCCGGCCGTCCCCACCCCGCGCAGGTC
GCCCCAGCGGGCTCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGGTACCGGCCGGATCCGAGCAGG
CGGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCGGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTCGAGGCGGGCGTGTTCGCCGCGGCGAAGCTCGCCGGGGGCTGCGCGGACGCCGGTCTCGC
CCGGGACCTGCGGCGGCTGGTGGTCCTCGGGGAGCGGGCCAAGGGGCGGCTCATCGAGGCCAACCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGGTACACGGGCCGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAATCTCGGGCTGATCCGCGCG
GTGGAGAAGTTCGACTACACCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGGCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTCGTGGAGCTGATCAACCGGGTCGTGCGCACCCAGCGTG
CCCTGCTCCAGGAGGCGGGGCGCGAGCCGGCCGCCGAGGAGGTCGGTGAGCGGCTCGGGCTGAGCGCCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGCGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGGTCCGCCAGATCGAGTCGAAGACGCTGCGCCGGCTCCGGGAGCACAC
GGCGGCGGGGCAGTTGCGGGGCTATCTGGAGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70, region 4 (Sigma70_r4)

(292-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126Y8M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.863

81.793

0.367

Multiple sequence alignment