Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MGCS36044_RS05475 Genome accession   NZ_CP117287
Coordinates   1077308..1078150 (-) Length   280 a.a.
NCBI ID   WP_084916845.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36044     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1072308..1083150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36044_RS05460 (MGCS36044_02196) - 1073149..1074093 (+) 945 WP_012766955.1 IS982 family transposase -
  MGCS36044_RS05465 (MGCS36044_02198) - 1074116..1074999 (+) 884 Protein_1020 LysR family transcriptional regulator -
  MGCS36044_RS05470 (MGCS36044_02200) topA 1075075..1077207 (-) 2133 WP_014612281.1 type I DNA topoisomerase -
  MGCS36044_RS05475 (MGCS36044_02202) dprA 1077308..1078150 (-) 843 WP_084916845.1 DNA-processing protein DprA Machinery gene
  MGCS36044_RS05480 (MGCS36044_02204) - 1078257..1079027 (-) 771 WP_022554642.1 ribonuclease HII -
  MGCS36044_RS05485 (MGCS36044_02206) ylqF 1079017..1079865 (-) 849 WP_003062503.1 ribosome biogenesis GTPase YlqF -
  MGCS36044_RS05490 (MGCS36044_02208) - 1080588..1080977 (-) 390 WP_232089461.1 hypothetical protein -
  MGCS36044_RS05495 (MGCS36044_02210) - 1081327..1081767 (+) 441 WP_003050852.1 DUF1836 domain-containing protein -
  MGCS36044_RS05500 (MGCS36044_02212) trhA 1081764..1082414 (+) 651 WP_003061861.1 PAQR family membrane homeostasis protein TrhA -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 31264.29 Da        Isoelectric Point: 9.0469

>NTDB_id=783331 MGCS36044_RS05475 WP_084916845.1 1077308..1078150(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36044]
MNHFELYKLKKAGLTNKNILNILDYQKQQEKSLSLRDMAVVSGCKHPSHFIETYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLDKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQIFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGESEGCLQLIKEGATCVTSGMDILSEYQK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=783331 MGCS36044_RS05475 WP_084916845.1 1077308..1078150(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36044]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAGGCTGGACTGACTAATAAAAATATTCTCAATATTCTTGACTACCAAAA
GCAACAGGAAAAATCGTTGTCGCTTCGAGACATGGCCGTTGTTTCCGGTTGTAAGCACCCGTCTCACTTTATAGAAACCT
ATAAGCAGTTAGATATCCAAAAGTTAAAAATGGAATTTAAACAATTCCCTAGTATTTCTATCCTAGATAAACATTACCCA
ATGGCTTTGAAAGAAATATATAATCCGCCCGTCCTCTTGTTTTTTCAAGGCAATTTAGACCTTCTTGATAAACCTAAATT
AGCCATTGTGGGCTCAAGGCGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACTATC
GCTATTATTGGAACAGGATTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAATTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAGGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GTCGAGGTATTCTCGTCGTTGAAGCAAAAAATCGCTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAGGGTCGA
GATATTTTTGCTGTTCCAGGAAACATTTTGGACGGCGAATCTGAAGGTTGTTTACAGCTTATAAAAGAGGGAGCAACCTG
CGTCACATCAGGGATGGACATCCTTTCTGAATATCAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.266

99.286

0.668

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus mitis SK321

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.857

99.643

0.596

  dprA Lactococcus lactis subsp. cremoris KW2

57.554

99.286

0.571

  dprA Legionella pneumophila strain ERS1305867

42.917

85.714

0.368