Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MGCS36089_RS09010 Genome accession   NZ_CP117284
Coordinates   1831565..1832056 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1826565..1837056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS08995 (MGCS36089_03660) - 1829342..1830286 (+) 945 WP_011888617.1 magnesium transporter CorA family protein -
  MGCS36089_RS09000 (MGCS36089_03662) - 1830418..1831074 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  MGCS36089_RS09005 (MGCS36089_03664) rpsR 1831207..1831446 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  MGCS36089_RS09010 (MGCS36089_03666) ssbA 1831565..1832056 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  MGCS36089_RS09015 (MGCS36089_03668) rpsF 1832078..1832368 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  MGCS36089_RS10575 (MGCS36089_03670) - 1833327..1833620 (-) 294 WP_014612572.1 hypothetical protein -
  MGCS36089_RS09020 (MGCS36089_03672) mutY 1833785..1834951 (+) 1167 WP_003060012.1 A/G-specific adenine glycosylase -
  MGCS36089_RS09025 (MGCS36089_03674) trxA 1835002..1835316 (-) 315 WP_003052691.1 thioredoxin -
  MGCS36089_RS09030 (MGCS36089_03676) - 1835543..1836862 (+) 1320 WP_003055162.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=783169 MGCS36089_RS09010 WP_002993238.1 1831565..1832056(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=783169 MGCS36089_RS09010 WP_002993238.1 1831565..1832056(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGCATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368