Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MGCS36089_RS01985 Genome accession   NZ_CP117284
Coordinates   368151..369221 (+) Length   356 a.a.
NCBI ID   WP_003057822.1    Uniprot ID   A0AAE9U680
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 363151..374221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS01970 (MGCS36089_00794) amiA 363678..365648 (+) 1971 WP_042357846.1 peptide ABC transporter substrate-binding protein Regulator
  MGCS36089_RS01975 (MGCS36089_00796) amiC 365714..367216 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  MGCS36089_RS01980 (MGCS36089_00798) amiD 367216..368142 (+) 927 WP_084916649.1 oligopeptide ABC transporter permease OppC Regulator
  MGCS36089_RS01985 (MGCS36089_00800) amiE 368151..369221 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  MGCS36089_RS01990 (MGCS36089_00802) amiF 369214..370137 (+) 924 WP_003057816.1 ATP-binding cassette domain-containing protein Regulator
  MGCS36089_RS02005 (MGCS36089_00808) comX/sigX/comX2/sigX2 370507..370989 (+) 483 WP_003057148.1 sigma-70 family RNA polymerase sigma factor Regulator
  MGCS36089_RS02010 (MGCS36089_00810) - 371234..371761 (+) 528 WP_015057333.1 YqeG family HAD IIIA-type phosphatase -
  MGCS36089_RS02015 (MGCS36089_00812) yqeH 371761..372879 (+) 1119 WP_002985994.1 ribosome biogenesis GTPase YqeH -
  MGCS36089_RS02020 (MGCS36089_00814) yhbY 372905..373213 (+) 309 WP_003059820.1 ribosome assembly RNA-binding protein YhbY -
  MGCS36089_RS02025 (MGCS36089_00816) - 373282..373914 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39607.62 Da        Isoelectric Point: 5.6648

>NTDB_id=783136 MGCS36089_RS01985 WP_003057822.1 368151..369221(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=783136 MGCS36089_RS01985 WP_003057822.1 368151..369221(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCAATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGATGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCGTTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGACAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCATTTGCGC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCAGAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.27

94.663

0.542