Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   MGCS36089_RS01990 Genome accession   NZ_CP117284
Coordinates   369214..370137 (+) Length   307 a.a.
NCBI ID   WP_003057816.1    Uniprot ID   A0A9X8T611
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 364214..375137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS01975 (MGCS36089_00796) amiC 365714..367216 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  MGCS36089_RS01980 (MGCS36089_00798) amiD 367216..368142 (+) 927 WP_084916649.1 oligopeptide ABC transporter permease OppC Regulator
  MGCS36089_RS01985 (MGCS36089_00800) amiE 368151..369221 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  MGCS36089_RS01990 (MGCS36089_00802) amiF 369214..370137 (+) 924 WP_003057816.1 ATP-binding cassette domain-containing protein Regulator
  MGCS36089_RS02005 (MGCS36089_00808) comX/sigX/comX2/sigX2 370507..370989 (+) 483 WP_003057148.1 sigma-70 family RNA polymerase sigma factor Regulator
  MGCS36089_RS02010 (MGCS36089_00810) - 371234..371761 (+) 528 WP_015057333.1 YqeG family HAD IIIA-type phosphatase -
  MGCS36089_RS02015 (MGCS36089_00812) yqeH 371761..372879 (+) 1119 WP_002985994.1 ribosome biogenesis GTPase YqeH -
  MGCS36089_RS02020 (MGCS36089_00814) yhbY 372905..373213 (+) 309 WP_003059820.1 ribosome assembly RNA-binding protein YhbY -
  MGCS36089_RS02025 (MGCS36089_00816) - 373282..373914 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  MGCS36089_RS02030 (MGCS36089_00818) yqeK 373911..374504 (+) 594 WP_003061317.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MGCS36089_RS02035 (MGCS36089_00820) - 374480..374740 (+) 261 WP_011528257.1 isochorismatase family protein -
  MGCS36089_RS02040 (MGCS36089_00822) rsfS 374742..375095 (+) 354 WP_003049699.1 ribosome silencing factor -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.93 Da        Isoelectric Point: 6.4058

>NTDB_id=783137 MGCS36089_RS01990 WP_003057816.1 369214..370137(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=783137 MGCS36089_RS01990 WP_003057816.1 369214..370137(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGCGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAGGAAAAGATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGCCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGACTTACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAACCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAATCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.759

100

0.818
  amiF Streptococcus thermophilus LMD-9

81.433

100

0.814
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814