Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   PQ615_RS06015 Genome accession   NZ_CP117058
Coordinates   1254533..1255843 (-) Length   436 a.a.
NCBI ID   WP_121796621.1    Uniprot ID   -
Organism   Streptococcus iniae strain LSSM211007SI     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1249533..1260843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS05985 (PQ615_05985) - 1249965..1250369 (-) 405 WP_230453495.1 cytidine deaminase -
  PQ615_RS05990 (PQ615_05990) deoC 1250341..1251003 (-) 663 WP_003099517.1 deoxyribose-phosphate aldolase -
  PQ615_RS05995 (PQ615_05995) - 1251015..1252292 (-) 1278 WP_003099515.1 pyrimidine-nucleoside phosphorylase -
  PQ615_RS06000 (PQ615_06000) - 1252279..1252878 (-) 600 WP_003099513.1 class I SAM-dependent methyltransferase -
  PQ615_RS06005 (PQ615_06005) coaA 1253139..1254059 (+) 921 WP_003099512.1 type I pantothenate kinase -
  PQ615_RS06010 (PQ615_06010) rpsT 1254119..1254361 (+) 243 WP_080613191.1 30S ribosomal protein S20 -
  PQ615_RS06015 (PQ615_06015) ciaH 1254533..1255843 (-) 1311 WP_121796621.1 cell wall metabolism sensor histidine kinase WalK Regulator
  PQ615_RS06020 (PQ615_06020) ciaR 1255836..1256510 (-) 675 WP_003099507.1 response regulator transcription factor Regulator
  PQ615_RS06025 (PQ615_06025) - 1256631..1259168 (-) 2538 WP_003099506.1 M1 family metallopeptidase -
  PQ615_RS06030 (PQ615_06030) phoU 1259230..1259883 (-) 654 WP_003099503.1 phosphate signaling complex protein PhoU -
  PQ615_RS06035 (PQ615_06035) pstB 1259938..1260696 (-) 759 WP_003099501.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49997.57 Da        Isoelectric Point: 9.1099

>NTDB_id=782449 PQ615_RS06015 WP_121796621.1 1254533..1255843(-) (ciaH) [Streptococcus iniae strain LSSM211007SI]
MANLKRIYQSDNFGHFFHFFAVFTGIFVVMTMIIIQIMQYGVYSSVDSSLLAVSKNSSVYANLTMERMTSFYFDNQEDAF
KNGTEVFKVALVEQPVANTDIILFSSNGTVLNSFDALSGFQNFTLKTNELNAIRTRKLMNFYGHEEKYHTLTVKIHSNRY
PAVAYLMAVVNVEQLDRANERYERIIVLVMITFWFISVLASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LETLFRKPNETILENSEPIASSLEEVRNMKILTTNLLNLARRDDGINPELVDVDASFFDAMFENFNLVAEDYGKDFHFEN
QVKRTIKMDKSLLKQLITILFDNALKYTDSDGQISISVRTTDKNLMVRVLDDGPGIKDMDKKKVFDRFYRVDKARTRTKG
GFGLGLSLAKQIVASLNGTISVKDNKPKGTIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=782449 PQ615_RS06015 WP_121796621.1 1254533..1255843(-) (ciaH) [Streptococcus iniae strain LSSM211007SI]
ATGGCTAATTTAAAACGTATTTACCAGTCAGATAATTTTGGGCATTTTTTCCATTTTTTTGCAGTCTTTACAGGAATATT
TGTTGTCATGACCATGATTATCATTCAAATCATGCAGTACGGTGTTTATTCTTCGGTAGATAGTAGTCTACTTGCTGTGT
CAAAAAATTCATCGGTTTATGCTAATTTAACCATGGAACGAATGACCTCATTTTACTTTGATAATCAAGAGGATGCTTTT
AAAAATGGAACTGAAGTCTTTAAAGTAGCCTTAGTTGAACAACCAGTTGCCAATACGGATATTATCCTCTTTAGTTCTAA
CGGAACGGTTTTAAATAGCTTTGATGCGCTATCGGGTTTTCAAAATTTTACCTTAAAAACAAATGAATTAAATGCCATTC
GAACACGGAAATTGATGAATTTTTACGGGCATGAAGAAAAATACCATACGCTGACAGTTAAGATTCATTCCAATAGGTAC
CCAGCGGTGGCTTACCTAATGGCAGTTGTCAATGTGGAACAATTGGACCGTGCCAATGAGCGCTATGAACGAATCATTGT
TCTTGTTATGATAACTTTCTGGTTTATTTCTGTTTTGGCCAGTATATACCTTGCAAAATGGAGTCGTAAACCAATTCTTG
AAAGTTATGAGAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTAAGAACTCCCTTAGCAGTATTACAAAATCGC
TTAGAGACCCTGTTTAGAAAACCTAATGAAACAATTCTGGAAAACAGTGAACCAATTGCTTCGAGTTTAGAAGAAGTGCG
CAATATGAAGATCTTAACCACAAATTTATTGAATCTTGCCAGACGCGATGATGGGATTAATCCAGAACTCGTTGATGTGG
ATGCAAGCTTTTTTGACGCTATGTTTGAAAACTTCAACTTAGTAGCTGAAGATTATGGTAAAGACTTCCATTTTGAAAAT
CAGGTTAAGCGGACAATAAAAATGGATAAATCTTTATTAAAACAATTGATTACCATTTTATTTGATAATGCTTTGAAATA
CACGGACTCTGATGGGCAAATTTCAATTAGTGTTCGAACAACAGATAAAAATTTAATGGTCAGAGTGCTAGATGATGGTC
CTGGAATAAAAGACATGGATAAAAAGAAAGTTTTTGACCGCTTCTATCGTGTTGATAAGGCTAGAACACGTACTAAAGGT
GGATTTGGTTTGGGACTTTCTTTAGCAAAACAGATTGTTGCTTCCTTAAATGGAACAATATCAGTTAAAGACAATAAACC
AAAAGGGACAATATTTGAAGTTAAACTCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.506

99.312

0.571
  ciaH Streptococcus pneumoniae Rx1

52.064

100

0.521
  ciaH Streptococcus pneumoniae D39

52.064

100

0.521
  ciaH Streptococcus pneumoniae R6

52.064

100

0.521
  ciaH Streptococcus pneumoniae TIGR4

52.064

100

0.521