Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PQ615_RS02050 Genome accession   NZ_CP117058
Coordinates   436156..436647 (+) Length   163 a.a.
NCBI ID   WP_003102076.1    Uniprot ID   A0A1J0N134
Organism   Streptococcus iniae strain LSSM211007SI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 434424..435227 436156..436647 flank 929


Gene organization within MGE regions


Location: 434424..436647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS02040 (PQ615_02035) - 434424..435591 (-) 1168 Protein_389 IS30-like element ISSag9 family transposase -
  PQ615_RS02045 (PQ615_02040) rpsF 435845..436135 (+) 291 WP_003102078.1 30S ribosomal protein S6 -
  PQ615_RS02050 (PQ615_02045) ssbA 436156..436647 (+) 492 WP_003102076.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18024.78 Da        Isoelectric Point: 4.9008

>NTDB_id=782426 PQ615_RS02050 WP_003102076.1 436156..436647(+) (ssbA) [Streptococcus iniae strain LSSM211007SI]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQSGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYDNQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGFNNSSSNNNYSAPAQQTPNFGREESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=782426 PQ615_RS02050 WP_003102076.1 436156..436647(+) (ssbA) [Streptococcus iniae strain LSSM211007SI]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTTAAAAGCCAAAGTGGTGAGCGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCATTGATTGGAATAACAGGTCGTATTCAAACCCGT
AATTATGACAATCAACAAGGTCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATGGTGGCGGTTTTAACAATTCATCATCAAATAATAATTATTCTGCTC
CAGCACAACAAACGCCTAATTTTGGTCGAGAAGAAAGTCCATTTGGAAACTCTAACCCAATGGATATCTCAGATGACGAT
TTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0N134

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.25

100

0.607
  ssb Latilactobacillus sakei subsp. sakei 23K

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368