Detailed information NTG0078229

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JLF49_RS03410
• Genome accession: NZ_AP022473
• Coordinates: 728401..729267 (-)
• Length: 288 a.a.
• NCBI ID: WP_104833507.1
• Uniprot ID: -
• Organism: Pseudomonas monteilii strain STW0522-72
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 723401..734267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLF49_RS03375 (STW0522PSE72_06470)	-	723861..725156 (-)	1296	WP_060500123.1	NAD(P)/FAD-dependent oxidoreductase	-
JLF49_RS03380 (STW0522PSE72_06480)	-	725241..725414 (-)	174	WP_013970765.1	DUF3094 family protein	-
JLF49_RS03385 (STW0522PSE72_06490)	-	725547..726176 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
JLF49_RS03390 (STW0522PSE72_06500)	-	726232..726663 (-)	432	WP_060500126.1	hypothetical protein	-
JLF49_RS03395 (STW0522PSE72_06510)	-	726750..727457 (+)	708	WP_200929064.1	energy-coupling factor ABC transporter permease	-
JLF49_RS03400 (STW0522PSE72_06530)	yacG	727581..727781 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
JLF49_RS03405 (STW0522PSE72_06540)	coaE	727778..728401 (-)	624	WP_016713386.1	dephospho-CoA kinase	-
JLF49_RS03410 (STW0522PSE72_06550)	pilD	728401..729267 (-)	867	WP_104833507.1	prepilin peptidase	Machinery gene
JLF49_RS03415 (STW0522PSE72_06560)	-	729270..730478 (-)	1209	WP_200929065.1	type II secretion system F family protein	-
JLF49_RS03420 (STW0522PSE72_06570)	pilA	730695..731105 (+)	411	WP_200929066.1	pilin	Machinery gene
JLF49_RS03430 (STW0522PSE72_06580)	-	731418..732635 (+)	1218	WP_200929067.1	tyrosine-type recombinase/integrase	-
JLF49_RS03435 (STW0522PSE72_06590)	-	732632..733315 (+)	684	WP_200929068.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31982.19 Da
• Isoelectric Point: 7.5974

>NTDB_id=78229 JLF49_RS03410 WP_104833507.1 728401..729267(-) (pilD) [Pseudomonas monteilii strain STW0522-72]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERYDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSACKTRISPRYPVVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDMLVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=78229 JLF49_RS03410 WP_104833507.1 728401..729267(-) (pilD) [Pseudomonas monteilii strain STW0522-72]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGC
TGCCGGTTACGCAACACGAACGGTACGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGTTACCTGGCATTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGGTGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGCTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATATGCTGGTGCTG
CCGATGTTGTGGCTGGGGCTGATCGTCAATGCCTTCAACCTGTATGCCCCGCTTACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGTATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGCTGGCCTGTGCCTGCTGCGTCTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.43	96.181	0.514
pilD	Acinetobacter baumannii D1279779	51.246	97.569	0.5
pilD	Acinetobacter nosocomialis M2	51.88	92.361	0.479
pilD	Vibrio campbellii strain DS40M4	48.561	96.528	0.469
pilD	Neisseria gonorrhoeae MS11	48.507	93.056	0.451