Detailed information NTG0782184

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PPW95_RS11295
• Genome accession: NZ_CP117039
• Coordinates: 614132..615001 (-)
• Length: 289 a.a.
• NCBI ID: WP_031855539.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP220218
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 609132..620001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPW95_RS11260 (PPW95_11260)	rpsP	610137..610385 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
PPW95_RS11265 (PPW95_11265)	rimM	610414..610962 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
PPW95_RS11270 (PPW95_11270)	trmD	610990..611733 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PPW95_RS11275 (PPW95_11275)	rplS	611775..612128 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
PPW95_RS11280 (PPW95_11280)	yacG	612486..612680 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
PPW95_RS11285 (PPW95_11285)	zapD	612749..613489 (-)	741	WP_023624252.1	cell division protein ZapD	-
PPW95_RS11290 (PPW95_11290)	coaE	613517..614131 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
PPW95_RS11295 (PPW95_11295)	pilD	614132..615001 (-)	870	WP_031855539.1	prepilin peptidase	Machinery gene
PPW95_RS11300 (PPW95_11300)	pilC	615066..616289 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
PPW95_RS11305 (PPW95_11305)	pilB	616314..617999 (-)	1686	WP_031855538.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PPW95_RS11310 (PPW95_11310)	pilA	617999..618427 (-)	429	WP_009698754.1	type IV pilin protein	Machinery gene
PPW95_RS11315 (PPW95_11315)	nadC	618692..619579 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1972

>NTDB_id=782184 PPW95_RS11295 WP_031855539.1 614132..615001(-) (pilD) [Vibrio parahaemolyticus strain VP220218]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQEAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=782184 PPW95_RS11295 WP_031855539.1 614132..615001(-) (pilD) [Vibrio parahaemolyticus strain VP220218]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGAAGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGGTGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45