Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PPW95_RS10005 Genome accession   NZ_CP117039
Coordinates   360170..360685 (+) Length   171 a.a.
NCBI ID   WP_015297395.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP220218     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355170..365685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPW95_RS09985 (PPW95_09985) - 355303..357873 (-) 2571 WP_005496567.1 penicillin-binding protein 1A -
  PPW95_RS09990 (PPW95_09990) pilM 358016..359032 (+) 1017 WP_031855783.1 type IV pilus biogenesis protein PilM Machinery gene
  PPW95_RS09995 (PPW95_09995) pilN 359016..359594 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  PPW95_RS10000 (PPW95_10000) pilO 359587..360180 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  PPW95_RS10005 (PPW95_10005) pilP 360170..360685 (+) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  PPW95_RS10010 (PPW95_10010) pilQ 360717..362465 (+) 1749 WP_031855784.1 type IV pilus secretin PilQ Machinery gene
  PPW95_RS10015 (PPW95_10015) aroK 362654..363172 (+) 519 WP_005381319.1 shikimate kinase AroK -
  PPW95_RS10020 (PPW95_10020) aroB 363204..364304 (+) 1101 WP_025794806.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18901.02 Da        Isoelectric Point: 10.4654

>NTDB_id=782173 PPW95_RS10005 WP_015297395.1 360170..360685(+) (pilP) [Vibrio parahaemolyticus strain VP220218]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=782173 PPW95_RS10005 WP_015297395.1 360170..360685(+) (pilP) [Vibrio parahaemolyticus strain VP220218]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTTGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGCGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

57.558

100

0.579