Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LYZ37_RS01055 Genome accession   NZ_CP117029
Coordinates   233681..234313 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio tubiashii strain FP17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 228681..239313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS01040 (LYZ37_01040) astA 229990..231009 (+) 1020 WP_272786151.1 arginine N-succinyltransferase -
  LYZ37_RS01045 (LYZ37_01045) astD 231045..232502 (+) 1458 WP_272786152.1 succinylglutamate-semialdehyde dehydrogenase -
  LYZ37_RS01050 (LYZ37_01050) - 232686..233477 (+) 792 WP_272786153.1 DUF1338 domain-containing protein -
  LYZ37_RS01055 (LYZ37_01055) crp 233681..234313 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  LYZ37_RS01060 (LYZ37_01060) - 234556..235425 (-) 870 WP_171323674.1 phosphoribulokinase -
  LYZ37_RS01065 (LYZ37_01065) - 235514..235726 (-) 213 WP_171323672.1 YheU family protein -
  LYZ37_RS01070 (LYZ37_01070) - 235767..236744 (-) 978 WP_272786158.1 hydrolase -
  LYZ37_RS01075 (LYZ37_01075) - 236766..237245 (-) 480 WP_004745855.1 TIGR02444 family protein -
  LYZ37_RS01080 (LYZ37_01080) - 237242..239164 (-) 1923 WP_272786159.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=782094 LYZ37_RS01055 WP_004410522.1 233681..234313(-) (crp) [Vibrio tubiashii strain FP17]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=782094 LYZ37_RS01055 WP_004410522.1 233681..234313(-) (crp) [Vibrio tubiashii strain FP17]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAGAAAGCTGAAACTTTGTACTACATCGTAAAAGGTTCAGTAGCGGTTCTTATTAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCATGGGTTCGTGCTAAATCCCCTTGTGAAGTTGCGGAAATCTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGATATCCTAATGCGCTTATCTGCGCAAATGGCAAGCCGCCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCATTCCTAGACGTAACTGGCCGTATTGCTCAAACGCTACTAAACCTAGCGAAGCAACCAGATGCGATGACTCAC
CCAGATGGCATGCAGATTAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAAATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467