Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PPK11_RS03525 Genome accession   NZ_CP117024
Coordinates   745922..746722 (-) Length   266 a.a.
NCBI ID   WP_273899053.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 740922..751722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS03495 recJ 741255..742805 (+) 1551 WP_273899045.1 single-stranded-DNA-specific exonuclease RecJ -
  PPK11_RS03500 - 742805..743686 (+) 882 WP_273899047.1 RluA family pseudouridine synthase -
  PPK11_RS03505 - 743882..744448 (-) 567 WP_273899048.1 hypothetical protein -
  PPK11_RS03510 - 744432..744737 (-) 306 WP_273899049.1 hypothetical protein -
  PPK11_RS03515 - 744922..745389 (-) 468 WP_273899050.1 tetratricopeptide repeat protein -
  PPK11_RS03520 dprB 745521..745925 (-) 405 WP_273899051.1 Holliday junction resolvase RuvX Machinery gene
  PPK11_RS03525 dprA 745922..746722 (-) 801 WP_273899053.1 DNA-processing protein DprA Machinery gene
  PPK11_RS03530 minE 746734..746967 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  PPK11_RS03535 minD 746964..747770 (-) 807 WP_273899064.1 septum site-determining protein MinD -
  PPK11_RS03540 ilvC 747794..748786 (-) 993 WP_273899065.1 ketol-acid reductoisomerase -
  PPK11_RS03550 - 749035..749817 (+) 783 WP_273899066.1 NAD+ synthase -
  PPK11_RS03555 - 749814..750752 (+) 939 WP_273899067.1 tetraacyldisaccharide 4'-kinase -
  PPK11_RS03560 pseH 750685..751227 (-) 543 WP_273899068.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29946.92 Da        Isoelectric Point: 8.8854

>NTDB_id=782066 PPK11_RS03525 WP_273899053.1 745922..746722(-) (dprA) [Helicobacter pylori strain 444A6]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLSRNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKRQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=782066 PPK11_RS03525 WP_273899053.1 745922..746722(-) (dprA) [Helicobacter pylori strain 444A6]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTGATTTATCCTACAAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTATCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTGCCTCAGCGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAAGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGATT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCGAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGACAAACTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414