Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   PPK11_RS03520 Genome accession   NZ_CP117024
Coordinates   745521..745925 (-) Length   134 a.a.
NCBI ID   WP_273899051.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740521..750925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS03495 recJ 741255..742805 (+) 1551 WP_273899045.1 single-stranded-DNA-specific exonuclease RecJ -
  PPK11_RS03500 - 742805..743686 (+) 882 WP_273899047.1 RluA family pseudouridine synthase -
  PPK11_RS03505 - 743882..744448 (-) 567 WP_273899048.1 hypothetical protein -
  PPK11_RS03510 - 744432..744737 (-) 306 WP_273899049.1 hypothetical protein -
  PPK11_RS03515 - 744922..745389 (-) 468 WP_273899050.1 tetratricopeptide repeat protein -
  PPK11_RS03520 dprB 745521..745925 (-) 405 WP_273899051.1 Holliday junction resolvase RuvX Machinery gene
  PPK11_RS03525 dprA 745922..746722 (-) 801 WP_273899053.1 DNA-processing protein DprA Machinery gene
  PPK11_RS03530 minE 746734..746967 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  PPK11_RS03535 minD 746964..747770 (-) 807 WP_273899064.1 septum site-determining protein MinD -
  PPK11_RS03540 ilvC 747794..748786 (-) 993 WP_273899065.1 ketol-acid reductoisomerase -
  PPK11_RS03550 - 749035..749817 (+) 783 WP_273899066.1 NAD+ synthase -
  PPK11_RS03555 - 749814..750752 (+) 939 WP_273899067.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15279.73 Da        Isoelectric Point: 9.1828

>NTDB_id=782065 PPK11_RS03520 WP_273899051.1 745521..745925(-) (dprB) [Helicobacter pylori strain 444A6]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=782065 PPK11_RS03520 WP_273899051.1 745521..745925(-) (dprB) [Helicobacter pylori strain 444A6]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCACTTTTGAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAACGCACGCATTGAACATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAACAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.744

99.254

0.97