Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q3O83_RS07995 Genome accession   NZ_CP130445
Coordinates   1580205..1582253 (+) Length   682 a.a.
NCBI ID   WP_069473414.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1575205..1587253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS07965 (Q3O83_07965) spoVM 1575849..1575929 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  Q3O83_RS07970 (Q3O83_07970) rpmB 1576007..1576195 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  Q3O83_RS07975 (Q3O83_07975) - 1576454..1576816 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  Q3O83_RS07980 (Q3O83_07980) - 1576832..1578499 (+) 1668 WP_003154326.1 DAK2 domain-containing protein -
  Q3O83_RS07985 (Q3O83_07985) sdaAB 1578642..1579304 (+) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  Q3O83_RS07990 (Q3O83_07990) sdaAA 1579325..1580227 (+) 903 WP_003154324.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  Q3O83_RS07995 (Q3O83_07995) recG 1580205..1582253 (+) 2049 WP_069473414.1 ATP-dependent DNA helicase RecG Machinery gene
  Q3O83_RS08000 (Q3O83_08000) fapR 1582360..1582926 (+) 567 WP_003154320.1 transcription factor FapR -
  Q3O83_RS08005 (Q3O83_08005) plsX 1582940..1583938 (+) 999 WP_003154319.1 phosphate acyltransferase PlsX -
  Q3O83_RS08010 (Q3O83_08010) fabD 1583957..1584910 (+) 954 WP_032856793.1 ACP S-malonyltransferase -
  Q3O83_RS08015 (Q3O83_08015) fabG 1584903..1585643 (+) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  Q3O83_RS08020 (Q3O83_08020) acpP 1585728..1585961 (+) 234 WP_003154310.1 acyl carrier protein -
  Q3O83_RS08025 (Q3O83_08025) rncS 1586100..1586849 (+) 750 WP_003154303.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77859.18 Da        Isoelectric Point: 6.8208

>NTDB_id=781907 Q3O83_RS07995 WP_069473414.1 1580205..1582253(+) (recG) [Bacillus amyloliquefaciens strain C6.7]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEELLLFQLKMQAFRKAEREQSKGISHV
FPAEKLTAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGHQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKLADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=781907 Q3O83_RS07995 WP_069473414.1 1580205..1582253(+) (recG) [Bacillus amyloliquefaciens strain C6.7]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAGTGGGATAAACACAGACAGACCATTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTAAGAATCCGCTATAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTATG
AGGAATTGTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCACCGCTTTCACAGACAGCCTGCCGTTTTCACTCACGACCGCACAGACGCGCGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTCTGTCGGGGCATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTAAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGTCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATACCGAGAACGTTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAAGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGATTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCCGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCAGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GTCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGCTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTAGAAGGGGAGAAATTAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(261-415)

RecG wedge domain (RecG_wedge)

(11-164)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.443

100

0.894
  recG/mmsA Streptococcus pneumoniae R6

49.475

97.801

0.484
  recG/mmsA Streptococcus pneumoniae R36A

49.475

97.801

0.484
  recG Neisseria meningitidis strain C311

39.816

95.748

0.381