NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	Q2B68_RS14295	Genome accession	NZ_CP130280
Coordinates	2886147..2886752 (-)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain PM415
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2881147..2891752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2B68_RS14260 (Q2B68_14260)	-	2881159..2881815 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
Q2B68_RS14265 (Q2B68_14265)	-	2881982..2882368 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
Q2B68_RS14270 (Q2B68_14270)	yajC	2882420..2882680 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
Q2B68_RS14275 (Q2B68_14275)	tgt	2882712..2883857 (-)	1146	WP_014305500.1	tRNA guanosine(34) transglycosylase Tgt	-
Q2B68_RS14280 (Q2B68_14280)	queA	2883885..2884913 (-)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
Q2B68_RS14285 (Q2B68_14285)	-	2884939..2885139 (-)	201	WP_015387898.1	DUF2905 domain-containing protein	-
Q2B68_RS14290 (Q2B68_14290)	ruvB	2885132..2886136 (-)	1005	WP_003152685.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Q2B68_RS14295 (Q2B68_14295)	ruvA	2886147..2886752 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
Q2B68_RS14300 (Q2B68_14300)	-	2886887..2887396 (-)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
Q2B68_RS14305 (Q2B68_14305)	-	2887782..2888375 (-)	594	WP_003152677.1	YhcN/YlaJ family sporulation lipoprotein	-
Q2B68_RS14310 (Q2B68_14310)	safA	2888523..2889728 (-)	1206	WP_302564964.1	spore coat assembly protein SafA	-
Q2B68_RS14315 (Q2B68_14315)	nadA	2889855..2890958 (-)	1104	WP_024085652.1	quinolinate synthase NadA	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=781799 Q2B68_RS14295 WP_003152683.1 2886147..2886752(-) (ruvA) [Bacillus amyloliquefaciens strain PM415]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=781799 Q2B68_RS14295 WP_003152683.1 2886147..2886752(-) (ruvA) [Bacillus amyloliquefaciens strain PM415]

GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA

GGTCTTTACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAAACCATTTTTACGTATCATCATATAAAAGAAGATG

CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG

AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGACCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT

GAAGCGCTTAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0781799