Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q2B68_RS09095 Genome accession   NZ_CP130280
Coordinates   1777243..1779291 (+) Length   682 a.a.
NCBI ID   WP_069448729.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772243..1784291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS09065 (Q2B68_09065) spoVM 1772887..1772967 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  Q2B68_RS09070 (Q2B68_09070) rpmB 1773045..1773233 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  Q2B68_RS09075 (Q2B68_09075) - 1773492..1773854 (+) 363 WP_302565207.1 Asp23/Gls24 family envelope stress response protein -
  Q2B68_RS09080 (Q2B68_09080) - 1773870..1775537 (+) 1668 WP_003154326.1 DAK2 domain-containing protein -
  Q2B68_RS09085 (Q2B68_09085) sdaAB 1775680..1776342 (+) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  Q2B68_RS09090 (Q2B68_09090) sdaAA 1776363..1777265 (+) 903 WP_003154324.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  Q2B68_RS09095 (Q2B68_09095) recG 1777243..1779291 (+) 2049 WP_069448729.1 ATP-dependent DNA helicase RecG Machinery gene
  Q2B68_RS09100 (Q2B68_09100) fapR 1779398..1779964 (+) 567 WP_003154320.1 transcription factor FapR -
  Q2B68_RS09105 (Q2B68_09105) plsX 1779978..1780976 (+) 999 WP_003154319.1 phosphate acyltransferase PlsX -
  Q2B68_RS09110 (Q2B68_09110) fabD 1780995..1781948 (+) 954 WP_003154316.1 ACP S-malonyltransferase -
  Q2B68_RS09115 (Q2B68_09115) fabG 1781941..1782681 (+) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  Q2B68_RS09120 (Q2B68_09120) acpP 1782766..1782999 (+) 234 WP_003154310.1 acyl carrier protein -
  Q2B68_RS09125 (Q2B68_09125) rncS 1783138..1783887 (+) 750 WP_003154303.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77879.17 Da        Isoelectric Point: 6.8208

>NTDB_id=781758 Q2B68_RS09095 WP_069448729.1 1777243..1779291(+) (recG) [Bacillus amyloliquefaciens strain PM415]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLTAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGHQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=781758 Q2B68_RS09095 WP_069448729.1 1777243..1779291(+) (recG) [Bacillus amyloliquefaciens strain PM415]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAGTGGGATAAACACAGACAGACCATTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTAAGAATCCGCTATAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTATG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCACCGCTTTCACAGACAGCCTGCCGTTTTCACTCACGACCGCACAGACGCGCGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTCTGTCGGGGCATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTAAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGTCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATACCGAGAACGTTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAAGTGATGAGAGAATTCAGCGCTAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGATTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCCGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCAGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTAGAAGGGGAGAAATTAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(261-415)

RecG wedge domain (RecG_wedge)

(11-164)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.736

100

0.897
  recG/mmsA Streptococcus pneumoniae R6

49.475

97.801

0.484
  recG/mmsA Streptococcus pneumoniae R36A

49.475

97.801

0.484
  recG Neisseria meningitidis strain C311

39.663

95.748

0.38