Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   M0P28_RS11135 Genome accession   NZ_CP116958
Coordinates   2189070..2189537 (+) Length   155 a.a.
NCBI ID   WP_247909414.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2184070..2194537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS11095 (M0P28_11095) - 2184804..2185100 (-) 297 WP_003066579.1 bacteriocin immunity protein -
  M0P28_RS11100 (M0P28_11100) - 2185100..2185318 (-) 219 WP_003066580.1 Blp family class II bacteriocin -
  M0P28_RS12200 (M0P28_11105) - 2185511..2185630 (-) 120 WP_253066439.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  M0P28_RS11110 (M0P28_11110) - 2185627..2185974 (-) 348 WP_003066582.1 CPBP family intramembrane glutamic endopeptidase -
  M0P28_RS11115 (M0P28_11115) - 2186004..2186183 (-) 180 WP_003066584.1 hypothetical protein -
  M0P28_RS11120 (M0P28_11120) - 2186354..2186665 (-) 312 WP_248488375.1 hypothetical protein -
  M0P28_RS11125 (M0P28_11125) - 2186754..2186984 (-) 231 WP_003066588.1 bacteriocin -
  M0P28_RS11130 (M0P28_11130) - 2187229..2189007 (+) 1779 Protein_2145 peptide cleavage/export ABC transporter -
  M0P28_RS11135 (M0P28_11135) comB 2189070..2189537 (+) 468 WP_247909414.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  M0P28_RS11140 (M0P28_11140) rsmA 2189671..2190543 (-) 873 WP_003066593.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  M0P28_RS11145 (M0P28_11145) - 2190624..2191148 (-) 525 WP_061100343.1 DUF1697 domain-containing protein -
  M0P28_RS11150 (M0P28_11150) rnmV 2191145..2191714 (-) 570 WP_048791091.1 ribonuclease M5 -
  M0P28_RS11155 (M0P28_11155) - 2191707..2192477 (-) 771 WP_061100344.1 TatD family hydrolase -
  M0P28_RS11160 (M0P28_11160) - 2192517..2192732 (+) 216 WP_117480047.1 hypothetical protein -
  M0P28_RS11165 (M0P28_11165) - 2192707..2194272 (+) 1566 WP_248488374.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17140.60 Da        Isoelectric Point: 9.8537

>NTDB_id=781713 M0P28_RS11135 WP_247909414.1 2189070..2189537(+) (comB) [Streptococcus pasteurianus strain WUSP074]
MQAQLDQTNLSKADTVLKASQSGILHVSDEFEGQTLLPQGSQIAEIYPDIAKTQQVAIRYYVDSTHVSQLKKGQTVRLTL
EKISNHAIVITGKISKIASSATQTKEGNIFEVTALAIVDKQDSSKLKYGLQGKTISTIGKKTFFNYYKDKLLKDF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=781713 M0P28_RS11135 WP_247909414.1 2189070..2189537(+) (comB) [Streptococcus pasteurianus strain WUSP074]
TTGCAAGCGCAGCTTGACCAGACAAATCTCTCCAAAGCTGACACCGTTTTAAAAGCTAGTCAAAGTGGCATTTTACATGT
TTCTGATGAATTTGAAGGGCAAACGCTCTTGCCGCAAGGCAGTCAGATTGCAGAGATTTACCCAGATATTGCCAAAACAC
AGCAAGTCGCTATCCGCTATTACGTTGACTCCACTCATGTTAGTCAATTGAAAAAAGGACAGACTGTTCGCCTAACCCTT
GAAAAAATTAGCAATCACGCCATTGTTATCACTGGCAAAATCAGTAAAATTGCAAGTTCTGCCACACAAACCAAAGAAGG
AAATATCTTTGAGGTGACAGCACTAGCCATCGTTGATAAACAAGATAGCTCCAAACTAAAATATGGTTTACAAGGCAAAA
CAATCAGCACTATCGGCAAAAAAACTTTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTGA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(16-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

58.209

86.452

0.503
  comB/nlmE Streptococcus mutans UA159

52.985

86.452

0.458
  comB Streptococcus gordonii str. Challis substr. CH1

39.073

97.419

0.381