Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   OT390_RS07505 Genome accession   NZ_CP116953
Coordinates   1449398..1450810 (-) Length   470 a.a.
NCBI ID   WP_002862130.1    Uniprot ID   A0A1E7P8U9
Organism   Campylobacter sp. CFSAN122748     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444398..1455810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS07480 (OT390_07465) - 1444722..1445486 (+) 765 WP_061099855.1 TSUP family transporter -
  OT390_RS07485 (OT390_07470) ctsF 1445479..1446660 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  OT390_RS07490 (OT390_07475) ctsE 1446657..1448216 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  OT390_RS07495 (OT390_07480) ctsX 1448206..1448793 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  OT390_RS07500 (OT390_07485) ctsP 1448797..1449405 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  OT390_RS07505 (OT390_07490) ctsD 1449398..1450810 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OT390_RS07510 (OT390_07495) ctsR 1450788..1451099 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  OT390_RS07515 (OT390_07500) nifJ 1451123..1454683 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  OT390_RS07520 (OT390_07505) - 1454776..1455417 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53055.57 Da        Isoelectric Point: 6.6184

>NTDB_id=781574 OT390_RS07505 WP_002862130.1 1449398..1450810(-) (ctsD) [Campylobacter sp. CFSAN122748]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=781574 OT390_RS07505 WP_002862130.1 1449398..1450810(-) (ctsD) [Campylobacter sp. CFSAN122748]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGATAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7P8U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.574

100

0.996