Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   OT390_RS07495 Genome accession   NZ_CP116953
Coordinates   1448206..1448793 (-) Length   195 a.a.
NCBI ID   WP_032584555.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN122748     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443206..1453793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS07475 (OT390_07460) - 1443954..1444718 (+) 765 WP_052800369.1 TIGR02757 family protein -
  OT390_RS07480 (OT390_07465) - 1444722..1445486 (+) 765 WP_061099855.1 TSUP family transporter -
  OT390_RS07485 (OT390_07470) ctsF 1445479..1446660 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  OT390_RS07490 (OT390_07475) ctsE 1446657..1448216 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  OT390_RS07495 (OT390_07480) ctsX 1448206..1448793 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  OT390_RS07500 (OT390_07485) ctsP 1448797..1449405 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  OT390_RS07505 (OT390_07490) ctsD 1449398..1450810 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OT390_RS07510 (OT390_07495) ctsR 1450788..1451099 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23433.52 Da        Isoelectric Point: 9.8479

>NTDB_id=781572 OT390_RS07495 WP_032584555.1 1448206..1448793(-) (ctsX) [Campylobacter sp. CFSAN122748]
MQERIKELELRYKYFLLKRYLKYLFLIVLILVIAFCFFVIMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=781572 OT390_RS07495 WP_032584555.1 1448206..1448793(-) (ctsX) [Campylobacter sp. CFSAN122748]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATATTTTTTACTTAAAAGATATTTAAAATATTTATTTTTAAT
TGTTTTAATCTTAGTAATAGCATTTTGTTTTTTTGTGATAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAGCATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

97.436

100

0.974