Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   OT390_RS07485 Genome accession   NZ_CP116953
Coordinates   1445479..1446660 (-) Length   393 a.a.
NCBI ID   WP_032586873.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN122748     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440479..1451660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS07455 (OT390_07440) - 1441029..1441370 (+) 342 WP_002784057.1 hypothetical protein -
  OT390_RS07460 (OT390_07445) flgM 1441427..1441624 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  OT390_RS07465 (OT390_07450) - 1441667..1442101 (+) 435 WP_002779263.1 flagellar protein FlgN -
  OT390_RS07470 (OT390_07455) flgK 1442111..1443937 (+) 1827 WP_394535973.1 flagellar hook-associated protein FlgK -
  OT390_RS07475 (OT390_07460) - 1443954..1444718 (+) 765 WP_052800369.1 TIGR02757 family protein -
  OT390_RS07480 (OT390_07465) - 1444722..1445486 (+) 765 WP_061099855.1 TSUP family transporter -
  OT390_RS07485 (OT390_07470) ctsF 1445479..1446660 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  OT390_RS07490 (OT390_07475) ctsE 1446657..1448216 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  OT390_RS07495 (OT390_07480) ctsX 1448206..1448793 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  OT390_RS07500 (OT390_07485) ctsP 1448797..1449405 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  OT390_RS07505 (OT390_07490) ctsD 1449398..1450810 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OT390_RS07510 (OT390_07495) ctsR 1450788..1451099 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45744.36 Da        Isoelectric Point: 9.0938

>NTDB_id=781570 OT390_RS07485 WP_032586873.1 1445479..1446660(-) (ctsF) [Campylobacter sp. CFSAN122748]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=781570 OT390_RS07485 WP_032586873.1 1445479..1446660(-) (ctsF) [Campylobacter sp. CFSAN122748]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAACTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985