Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   QZL40_RS13160 Genome accession   NZ_CP129936
Coordinates   2811712..2812170 (+) Length   152 a.a.
NCBI ID   WP_021486793.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain I13A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2806712..2817170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS13145 pdhR 2808744..2809511 (-) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  QZL40_RS13150 ampD 2809917..2810468 (-) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QZL40_RS13155 nadC 2810561..2811448 (+) 888 WP_025638275.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QZL40_RS13160 pilE 2811712..2812170 (+) 459 WP_021486793.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QZL40_RS13165 pilB 2812170..2813855 (+) 1686 WP_029855968.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QZL40_RS13170 pilC 2813879..2815102 (+) 1224 WP_005479682.1 type II secretion system F family protein Machinery gene
  QZL40_RS13175 pilD 2815167..2816036 (+) 870 WP_025533026.1 A24 family peptidase Machinery gene
  QZL40_RS13180 coaE 2816037..2816651 (+) 615 WP_005480887.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15442.56 Da        Isoelectric Point: 5.7425

>NTDB_id=781485 QZL40_RS13160 WP_021486793.1 2811712..2812170(+) (pilE) [Vibrio parahaemolyticus strain I13A]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYSDYTQRTRVAGAAAGISGFKTAIAMCAQERGQLTGCSNGANDIPA
AIAANNAGATIAYVDDLTVTDGVIAMTTTGVNDSGTELTLTLTPNIGNGVVQWTLAGTGCTTAGRSIDCSGN

Nucleotide


Download         Length: 459 bp        

>NTDB_id=781485 QZL40_RS13160 WP_021486793.1 2811712..2812170(+) (pilE) [Vibrio parahaemolyticus strain I13A]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCGATTATCGGTATTTT
GGCTGCATTTGCCGTGCCTGCCTACTCAGACTACACACAACGAACCCGTGTGGCCGGTGCAGCTGCAGGGATCAGTGGTT
TTAAAACAGCCATTGCCATGTGTGCTCAGGAACGTGGCCAGCTTACCGGTTGTAGCAACGGCGCAAATGATATCCCGGCA
GCAATTGCCGCGAATAACGCCGGTGCGACCATTGCTTATGTGGACGACTTAACGGTTACCGATGGCGTTATCGCCATGAC
CACGACCGGAGTTAATGACTCAGGTACCGAGCTAACACTGACGTTAACACCGAATATTGGCAATGGCGTTGTTCAGTGGA
CACTTGCTGGTACTGGCTGTACAACCGCTGGACGCAGCATTGATTGTTCTGGTAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(41-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

39.726

96.053

0.382
  pilA2 Legionella pneumophila str. Paris

38.462

94.079

0.362
  pilE Neisseria gonorrhoeae strain FA1090

38.194

94.737

0.362