Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PP479_RS11395 Genome accession   NZ_CP116935
Coordinates   2395066..2395701 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain CUVET18-860     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2390066..2400701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP479_RS11380 (PP479_11380) - 2390772..2392016 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PP479_RS11385 (PP479_11385) - 2392104..2392637 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PP479_RS11390 (PP479_11390) comA 2392768..2394993 (+) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PP479_RS11395 (PP479_11395) exbB 2395066..2395701 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PP479_RS11400 (PP479_11400) - 2395698..2396138 (+) 441 WP_034037427.1 ExbD/TolR family protein -
  PP479_RS11405 (PP479_11405) lpxK 2396138..2397136 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  PP479_RS11410 (PP479_11410) - 2397174..2397359 (+) 186 WP_003091157.1 Trm112 family protein -
  PP479_RS11415 (PP479_11415) kdsB 2397359..2398123 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PP479_RS11420 (PP479_11420) - 2398123..2398587 (+) 465 WP_034037425.1 low molecular weight protein-tyrosine-phosphatase -
  PP479_RS11425 (PP479_11425) murB 2398584..2399603 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=781368 PP479_RS11395 WP_003091163.1 2395066..2395701(+) (exbB) [Pseudomonas aeruginosa strain CUVET18-860]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=781368 PP479_RS11395 WP_003091163.1 2395066..2395701(+) (exbB) [Pseudomonas aeruginosa strain CUVET18-860]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81