Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   QZH48_RS08360 Genome accession   NZ_CP129879
Coordinates   1777190..1778560 (-) Length   456 a.a.
NCBI ID   WP_038601641.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772190..1783560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS08345 (QZH48_08345) - 1773363..1774796 (-) 1434 WP_146978186.1 6-phospho-beta-glucosidase -
  QZH48_RS08350 (QZH48_08350) yidD 1774917..1775183 (-) 267 WP_038601637.1 membrane protein insertion efficiency factor YidD -
  QZH48_RS08355 (QZH48_08355) - 1775300..1777042 (-) 1743 WP_301675608.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QZH48_RS08360 (QZH48_08360) ciaH 1777190..1778560 (-) 1371 WP_038601641.1 HAMP domain-containing sensor histidine kinase Regulator
  QZH48_RS08365 (QZH48_08365) ciaR 1778654..1779322 (-) 669 WP_021722129.1 response regulator transcription factor Regulator
  QZH48_RS08370 (QZH48_08370) - 1779500..1780474 (-) 975 WP_038601644.1 LacI family DNA-binding transcriptional regulator -
  QZH48_RS08375 (QZH48_08375) - 1780627..1782882 (-) 2256 WP_038601646.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 51372.92 Da        Isoelectric Point: 9.4589

>NTDB_id=781205 QZH48_RS08360 WP_038601641.1 1777190..1778560(-) (ciaH) [Lactococcus lactis subsp. lactis strain CAB701]
MKKIIKKVKSSAIVKNDGKNFLHFFLAFTVIFVALAVIIIQVMQLGMYRATDQNLHNLAQNRVFLIEAANNQLGMNNSQD
SGYYGPNNSVIFYDSEGKSFIPSAGSNANISTNFGMSLLQKTMKFNENQINTIQTVSVKNPYGDNWHYRYLTTSQFIITN
TDGTVTPVYAQIFSNVDQIQDAMSRAMWVIVTTMITFWLLSVIISLYLANWTLRPILAAYEKQKEFVENASHELRTPLAI
LQNRLELLFQKPTATIIDESENISESLSEVRNMRLLTSNLLNLARRDSGIRIEPEATTTTYFENIFNSYEMLAENAGKKF
SGHLKLDGTINLDQALIKQLLTILFDNALKYTGDEGEISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRFFRVDKART
RQKGGLGLGLSLAKQIVEAYNGKITVEDNKPKGTKFIIRIRVDSTISNPAKIFQKL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=781205 QZH48_RS08360 WP_038601641.1 1777190..1778560(-) (ciaH) [Lactococcus lactis subsp. lactis strain CAB701]
TTGAAGAAAATAATTAAAAAAGTTAAATCTTCAGCTATTGTAAAAAATGATGGGAAAAATTTCCTTCATTTTTTTCTAGC
TTTTACAGTCATTTTTGTTGCTTTAGCCGTGATTATTATTCAAGTCATGCAATTAGGAATGTATCGAGCGACTGACCAAA
ATTTACACAATTTGGCTCAAAACCGAGTCTTTTTGATAGAAGCGGCGAATAATCAATTAGGAATGAATAATTCGCAAGAT
AGTGGCTATTACGGCCCCAATAATAGTGTAATTTTTTATGATTCAGAGGGTAAAAGTTTCATACCTTCAGCAGGCTCAAA
TGCAAATATAAGTACAAACTTTGGCATGAGCCTTCTGCAAAAAACAATGAAATTTAACGAAAATCAAATTAACACTATTC
AAACTGTTTCTGTAAAAAATCCTTATGGAGATAATTGGCACTATCGTTATCTGACAACATCACAATTTATTATTACAAAT
ACTGATGGAACAGTAACACCGGTTTATGCACAAATTTTTTCAAATGTTGACCAAATTCAAGATGCCATGAGCCGAGCCAT
GTGGGTCATTGTGACAACAATGATTACTTTCTGGCTTCTGTCAGTAATTATTAGTTTGTATCTTGCAAATTGGACATTGA
GACCTATCCTGGCTGCTTATGAAAAGCAAAAAGAATTTGTTGAAAATGCTTCACATGAATTGAGAACACCTCTGGCAATT
TTGCAAAATCGTCTAGAATTACTTTTCCAAAAGCCAACAGCAACAATTATTGATGAATCAGAAAATATTTCTGAAAGTTT
ATCAGAAGTTCGTAATATGCGTTTATTAACAAGTAACTTACTGAACTTAGCTCGTCGAGATTCTGGAATCAGAATTGAAC
CAGAGGCGACTACGACAACTTATTTTGAGAATATTTTTAATAGCTATGAAATGCTTGCTGAAAACGCAGGTAAAAAGTTT
TCAGGCCATTTGAAATTAGATGGAACGATTAATTTGGACCAAGCCCTGATTAAACAATTGCTAACTATCTTATTTGATAA
TGCCCTTAAATACACGGGTGATGAGGGTGAAATCTCTGTAGATGTTCAAAAAAATGGGGGATTTTTAGTTTTTGCTGTCG
CCGATAATGGTGAAGGAATTTCTGATGAAGATAAGAAAAAAATCTTTGACCGCTTTTTCCGAGTAGATAAAGCAAGAACG
CGTCAAAAAGGTGGCTTAGGTTTGGGTCTTTCTCTGGCCAAACAAATTGTTGAAGCTTATAATGGGAAGATTACAGTTGA
AGATAATAAACCTAAAGGTACAAAATTCATTATTAGAATTCGTGTGGATAGCACAATTTCAAATCCTGCAAAAATTTTCC
AAAAGTTGTAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(223-289)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(333-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.605

94.298

0.458
  ciaH Streptococcus pneumoniae Rx1

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae D39

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae R6

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae TIGR4

44.543

98.465

0.439