Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   QZH48_RS02010 Genome accession   NZ_CP129879
Coordinates   402747..404189 (-) Length   480 a.a.
NCBI ID   WP_058206000.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 397747..409189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS01985 (QZH48_01985) nox 397782..399122 (+) 1341 WP_098393171.1 H2O-forming NADH oxidase -
  QZH48_RS01990 (QZH48_01990) ssbB 399212..399601 (+) 390 WP_038599186.1 single-stranded DNA-binding protein Machinery gene
  QZH48_RS01995 (QZH48_01995) groES 399721..400005 (+) 285 WP_003131589.1 co-chaperone GroES -
  QZH48_RS02000 (QZH48_02000) groL 400092..401720 (+) 1629 WP_003131585.1 chaperonin GroEL -
  QZH48_RS02005 (QZH48_02005) vicX 401764..402576 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  QZH48_RS02010 (QZH48_02010) vicK 402747..404189 (-) 1443 WP_058206000.1 cell wall metabolism sensor histidine kinase WalK Regulator
  QZH48_RS02015 (QZH48_02015) yycF 404182..404883 (-) 702 WP_038599193.1 response regulator YycF -
  QZH48_RS02020 (QZH48_02020) tmk 405061..405696 (+) 636 WP_038599196.1 dTMP kinase -
  QZH48_RS02025 (QZH48_02025) - 405829..406689 (+) 861 WP_038599199.1 DNA polymerase III subunit delta' -
  QZH48_RS02030 (QZH48_02030) yaaT 406741..407523 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  QZH48_RS02035 (QZH48_02035) yabA 407516..407842 (+) 327 WP_278227149.1 DNA replication initiation control protein YabA -
  QZH48_RS02040 (QZH48_02040) rsmI 407842..408717 (+) 876 WP_058204088.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QZH48_RS02045 (QZH48_02045) - 408794..408985 (-) 192 WP_003131566.1 hypothetical protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54636.07 Da        Isoelectric Point: 4.5625

>NTDB_id=781171 QZH48_RS02010 WP_058206000.1 402747..404189(-) (vicK) [Lactococcus lactis subsp. lactis strain CAB701]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMEKNIVE
VLKIEDQYNFYDLLEKEPEVTIETHDTGNEAISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSDGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEGNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=781171 QZH48_RS02010 WP_058206000.1 402747..404189(-) (vicK) [Lactococcus lactis subsp. lactis strain CAB701]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCCCACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATCGGTTACTACCTATTTTCACTCGTCTTTGTTTTAGTCTTTCTTA
ATCAGCAGCATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGTGATAAAATC
CCAAAAGGGACAAGTGAAATCAATGAATTATACGACGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACTCAGAACAA
TCTTGAAAATCAGAGAAATCAATTAGACAGCATCCTCGCCTATATGGTTGATGGCGTCATTGCCACCGACCGTCGCGGGA
ATATTATTATGGCCAATAAATCAGCTTTGCATTATTTGAATACAGATAATGATCTCTTGATGGAAAAAAATATTGTTGAG
GTCTTAAAAATTGAAGACCAGTATAATTTCTATGATTTATTGGAAAAGGAGCCAGAGGTAACTATTGAAACACATGATAC
TGGAAATGAAGCCATTTCACTTCACATAAAATTTGCTCTTTTTCGTCGTGAGTCTGGTTTTATTTCAGGAATTATTGCTG
TTTTACATGATATGACTGAACAAGATAAAGCAGAACGTGAACGACGCCTATTTGTTTCTAATGTTTCACACGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTCGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAACGCAATTAAGTATTCCCCTAAAGGTGGAACGATTA
CAATTTCCGTTGAAAAACGTGAAAGTGACGTTCTAATCTCCATCAGTGACCAAGGAATGGGAATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAACGCTTCAAGAAATTCAAAAGTTGGGGGAACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGCTCTGATGGAGAAGGAAAAGGAACAACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGAACTGATGAGTTTGAATTTGAGGGTAATGAA
TAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

PAS domain (PAS_9)

(124-220)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.319

86.875

0.446
  micB Streptococcus pneumoniae Cp1015

47.748

92.5

0.442