Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QZN14_RS06990 Genome accession   NZ_CP129875
Coordinates   1398333..1400324 (-) Length   663 a.a.
NCBI ID   WP_000567070.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393333..1405324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN14_RS06985 - 1393933..1398090 (-) 4158 WP_000822655.1 S8 family serine peptidase -
  QZN14_RS06990 uvrB 1398333..1400324 (-) 1992 WP_000567070.1 excinuclease ABC subunit UvrB Machinery gene
  QZN14_RS06995 - 1400385..1401305 (-) 921 WP_001042316.1 CPBP family intramembrane glutamic endopeptidase -
  QZN14_RS07000 - 1401488..1403671 (+) 2184 WP_000681010.1 ABC transporter substrate-binding protein/permease -
  QZN14_RS07005 - 1403671..1404411 (+) 741 WP_000818887.1 amino acid ABC transporter ATP-binding protein -
  QZN14_RS07010 - 1404561..1404911 (+) 351 WP_000656279.1 hypothetical protein -
  QZN14_RS07015 - 1405004..1405162 (-) 159 WP_000502594.1 hypothetical protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76050.05 Da        Isoelectric Point: 4.7094

>NTDB_id=781016 QZN14_RS06990 WP_000567070.1 1398333..1400324(-) (uvrB) [Streptococcus agalactiae COH1]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGQEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEFFPASRDEHAFRIEFFGDEIDRIREIESLTGRVL
GEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSNGHVIMYADK
ITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAITKSNDSDKPEKVVDYSSLSKKERQAKIKALQKQMQDA
AELLDFELAAQIRDVILELKAID

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=781016 QZN14_RS06990 WP_000567070.1 1398333..1400324(-) (uvrB) [Streptococcus agalactiae COH1]
ATGATAGATAGAAAAGATACTAACCGATTTAAATTAGTTTCCAAATATAGTCCTTCAGGAGATCAACCTCAAGCTATTGA
AACGTTGGTTGACAATATTGAAGGAGGAGAAAAAGCTCAGATTTTAAAAGGTGCTACTGGTACTGGTAAAACCTACACAA
TGAGCCAAGTTATCGCCCAAGTTAACAAGCCAACCTTGGTGATTGCACATAATAAAACCCTAGCAGGTCAACTTTATGGA
GAGTTTAAAGAATTTTTTCCTGACAATGCCGTAGAGTACTTTGTTTCATATTATGATTATTATCAACCAGAAGCTTATGT
GCCTTCTTCGGATACTTATATTGAAAAAGATAGCTCAGTCAATGACGAAATTGACAAATTACGTCACTCAGCGACTTCTT
CGTTATTAGAAAGAAATGACGTTATTGTTGTAGCATCTGTTTCTTGTATTTACGGTTTAGGTTCTCCTAAAGAGTATGCA
GACAGTGTTGTTAGCCTTAGGCCAGGTCAAGAAATTTCACGTGATCAGTTATTGAACAATCTCGTTGATATTCAATTTGA
GCGTAACGATATTGATTTTCAACGTGGAAAATTTCGCGTTCGTGGCGATGTTGTAGAATTTTTTCCTGCGAGTCGTGATG
AGCATGCCTTTCGAATTGAATTTTTTGGTGATGAAATTGATCGTATAAGAGAAATAGAATCGTTAACAGGGCGTGTGCTA
GGAGAAGTGGAACATTTAGCTATTTTCCCAGCAACACACTTTATGACAAATGATGAACATATGGAAGAAGCTATTTCAAA
AATACAAGCTGAAATGGAAAATCAAGTAGAACTTTTTGAAAAAGAAGGGAAATTGATTGAAGCGCAACGTATTCGACAAA
GGACAGAATATGATATTGAAATGCTTCGTGAAATGGGATATACAAATGGTGTTGAGAACTACTCACGTCACATGGATGGT
AGAAGTGAAGGTGAGCCACCTTTTACTTTGTTAGATTTCTTCCCAGAAGATTTTTTGATTATGATTGATGAGAGTCACAT
GACAATGGGGCAAATCAAAGGGATGTATAATGGAGACCGTTCGCGTAAAGAAATGTTGGTTAATTACGGTTTTCGTTTAC
CATCTGCCTTAGATAACCGTCCACTTCGTCGTGAAGAATTCGAAAGCCATGTCCATCAAATTGTCTATGTATCTGCAACG
CCAGGAGACTATGAAATGGAGCAAACAGATACAGTTGTTGAGCAAATTATCCGGCCAACAGGACTTCTTGATCCAGAAGT
TGAAGTTAGACCAAGTATGGGGCAGATGGATGACTTGCTTGGTGAAATCAATTTGAGGACTGAAAAAGGTGAGCGTACCT
TTATTACAACATTGACAAAGCGTATGGCAGAAGACTTAACAGATTATCTCAAAGAAATGGGAGTTAAAGTTAAGTATATG
CACAGCGATATTAAAACCTTAGAACGTACAGAGATTATTCGTGATCTACGACTTGGTGTGTTTGATGTTTTAATTGGTAT
TAATCTCTTACGTGAAGGAATAGATGTTCCTGAAGTTTCCCTTGTTGCAATCTTAGATGCTGATAAGGAAGGTTTCCTTC
GTAATGAGCGTGGTCTTATCCAAACAATCGGACGTGCAGCACGTAACAGTAATGGTCATGTTATTATGTATGCTGATAAA
ATAACAGATTCTATGCAAAGAGCTATGGATGAGACCGCTCGCCGTCGTCGTTTACAAATGGATTATAATGAAAAGCATGG
AATTGTGCCACAAACAATAAAAAAAGAAATCCGTGATTTAATTGCTATTACTAAAAGTAATGATAGCGATAAGCCTGAAA
AAGTTGTCGATTACAGTAGTTTATCTAAAAAAGAAAGGCAAGCTAAAATTAAAGCTCTTCAAAAGCAAATGCAAGATGCA
GCTGAATTATTGGACTTTGAGCTAGCTGCACAAATCCGAGATGTTATCTTAGAACTAAAAGCAATCGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-661)

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Type III restriction enzyme, res subunit (ResIII)

(20-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

87.179

100

0.872
  uvrB Streptococcus pneumoniae D39

87.179

100

0.872
  uvrB Streptococcus pneumoniae TIGR4

87.029

100

0.87