Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QY075_RS30170 Genome accession   NZ_CP129688
Coordinates   6415130..6415459 (+) Length   109 a.a.
NCBI ID   WP_019485985.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA2818     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6410130..6420459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS30155 - 6410859..6411803 (+) 945 WP_023093915.1 NAD-dependent epimerase/dehydratase family protein -
  QY075_RS30160 - 6411904..6412929 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  QY075_RS30165 - 6412942..6414939 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QY075_RS30170 comEA/comE1 6415130..6415459 (+) 330 WP_019485985.1 ComEA family DNA-binding protein Machinery gene
  QY075_RS30180 - 6415676..6416872 (-) 1197 WP_019485986.1 amino acid aminotransferase -
  QY075_RS30185 uvrB 6417060..6419072 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11325.23 Da        Isoelectric Point: 8.0459

>NTDB_id=780935 QY075_RS30170 WP_019485985.1 6415130..6415459(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA2818]
MHLIKSALLLILFACLPFSASAAPVAVAKNPAAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=780935 QY075_RS30170 WP_019485985.1 6415130..6415459(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA2818]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGGCGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385