Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PPM45_RS17520 Genome accession   NZ_CP116870
Coordinates   3410395..3411084 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3405395..3416084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS17485 flgN 3405575..3406057 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PPM45_RS17490 flgM 3406073..3406339 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PPM45_RS17495 yvyF 3406420..3406839 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PPM45_RS17500 comFC 3406913..3407635 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PPM45_RS17505 comFB 3407599..3407895 (-) 297 WP_003227989.1 late competence protein ComFB -
  PPM45_RS17510 comFA 3407955..3409346 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PPM45_RS17515 fakBA 3409452..3410297 (-) 846 WP_003244125.1 DegV family protein -
  PPM45_RS17520 degU 3410395..3411084 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PPM45_RS17525 degS 3411167..3412324 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PPM45_RS17530 yvyE 3412541..3413194 (+) 654 WP_003227979.1 YigZ family protein -
  PPM45_RS17535 tagV 3413194..3414369 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PPM45_RS17540 tagO 3414442..3415518 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=780746 PPM45_RS17520 WP_003219701.1 3410395..3411084(-) (degU) [Bacillus subtilis subsp. subtilis strain Master_strain]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=780746 PPM45_RS17520 WP_003219701.1 3410395..3411084(-) (degU) [Bacillus subtilis subsp. subtilis strain Master_strain]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1