Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PPM45_RS17500 Genome accession   NZ_CP116870
Coordinates   3406913..3407635 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3401913..3412635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS17465 fliW 3402052..3402483 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  PPM45_RS17470 yviE 3402504..3403079 (-) 576 WP_003243053.1 DUF6470 family protein -
  PPM45_RS17475 flgL 3403126..3404022 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  PPM45_RS17480 flgK 3404033..3405556 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  PPM45_RS17485 flgN 3405575..3406057 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PPM45_RS17490 flgM 3406073..3406339 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PPM45_RS17495 yvyF 3406420..3406839 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PPM45_RS17500 comFC 3406913..3407635 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PPM45_RS17505 comFB 3407599..3407895 (-) 297 WP_003227989.1 late competence protein ComFB -
  PPM45_RS17510 comFA 3407955..3409346 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PPM45_RS17515 fakBA 3409452..3410297 (-) 846 WP_003244125.1 DegV family protein -
  PPM45_RS17520 degU 3410395..3411084 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PPM45_RS17525 degS 3411167..3412324 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=780744 PPM45_RS17500 WP_003227991.1 3406913..3407635(-) (comFC) [Bacillus subtilis subsp. subtilis strain Master_strain]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=780744 PPM45_RS17500 WP_003227991.1 3406913..3407635(-) (comFC) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1