Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PPM45_RS15560 Genome accession   NZ_CP116870
Coordinates   3018592..3019236 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013592..3024236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS15525 mrpB 3014784..3015215 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  PPM45_RS15530 mrpC 3015215..3015556 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PPM45_RS15535 mrpD 3015549..3017030 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  PPM45_RS15540 mrpE 3017036..3017512 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  PPM45_RS15545 mrpF 3017512..3017796 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PPM45_RS15550 mnhG 3017780..3018154 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  PPM45_RS15555 yuxO 3018193..3018573 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  PPM45_RS15560 comA 3018592..3019236 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PPM45_RS15565 comP 3019317..3021626 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  PPM45_RS15570 comX 3021641..3021808 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  PPM45_RS15575 comQ 3021796..3022695 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  PPM45_RS15580 degQ 3022880..3023020 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PPM45_RS15585 - 3023242..3023367 (+) 126 WP_003228793.1 hypothetical protein -
  PPM45_RS15590 - 3023481..3023849 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=780737 PPM45_RS15560 WP_003220716.1 3018592..3019236(-) (comA) [Bacillus subtilis subsp. subtilis strain Master_strain]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=780737 PPM45_RS15560 WP_003220716.1 3018592..3019236(-) (comA) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1