Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PPM45_RS12020 Genome accession   NZ_CP116870
Coordinates   2363531..2363866 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2358531..2368866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS12000 gcvT 2359123..2360211 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  PPM45_RS12005 hepAA 2360653..2362326 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  PPM45_RS12010 yqhG 2362347..2363141 (+) 795 WP_003230200.1 YqhG family protein -
  PPM45_RS12015 sinI 2363324..2363497 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  PPM45_RS12020 sinR 2363531..2363866 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PPM45_RS12025 tasA 2363959..2364744 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  PPM45_RS12030 sipW 2364808..2365380 (-) 573 WP_003246088.1 signal peptidase I SipW -
  PPM45_RS12035 tapA 2365364..2366125 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  PPM45_RS12040 yqzG 2366397..2366723 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  PPM45_RS12045 spoIITA 2366765..2366944 (-) 180 WP_003230176.1 YqzE family protein -
  PPM45_RS12050 comGG 2367015..2367389 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  PPM45_RS12055 comGF 2367390..2367773 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  PPM45_RS12060 comGE 2367799..2368146 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  PPM45_RS12065 comGD 2368130..2368561 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  PPM45_RS12070 comGC 2368551..2368847 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=780716 PPM45_RS12020 WP_003226345.1 2363531..2363866(+) (sinR) [Bacillus subtilis subsp. subtilis strain Master_strain]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=780716 PPM45_RS12020 WP_003226345.1 2363531..2363866(+) (sinR) [Bacillus subtilis subsp. subtilis strain Master_strain]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1