Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QY067_RS24230 Genome accession   NZ_CP129685
Coordinates   5062419..5063423 (-) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain PA2500     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5057419..5068423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY067_RS24215 - 5057902..5058909 (+) 1008 WP_003092265.1 TolB family protein -
  QY067_RS24220 mutS 5059035..5061602 (+) 2568 WP_003122151.1 DNA mismatch repair protein MutS -
  QY067_RS24225 fdxA 5061669..5061992 (+) 324 WP_003092272.1 ferredoxin FdxA -
  QY067_RS24230 rpoS 5062419..5063423 (-) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  QY067_RS24235 - 5063528..5064421 (-) 894 WP_003092335.1 peptidoglycan DD-metalloendopeptidase family protein -
  QY067_RS24240 - 5064467..5065102 (-) 636 WP_073660134.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  QY067_RS24245 surE 5065135..5065884 (-) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  QY067_RS24250 truD 5065872..5066939 (-) 1068 WP_003092343.1 tRNA pseudouridine(13) synthase TruD -
  QY067_RS24255 ispF 5066936..5067409 (-) 474 WP_003092346.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QY067_RS24260 fghA 5067480..5068331 (-) 852 WP_003092349.1 S-formylglutathione hydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=780716 QY067_RS24230 WP_003113871.1 5062419..5063423(-) (rpoS) [Pseudomonas aeruginosa strain PA2500]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=780716 QY067_RS24230 WP_003113871.1 5062419..5063423(-) (rpoS) [Pseudomonas aeruginosa strain PA2500]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653