Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PPM66_RS14730 Genome accession   NZ_CP116867
Coordinates   2801898..2802542 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2796898..2807542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS14695 mrpB 2798090..2798521 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  PPM66_RS14700 mrpC 2798521..2798862 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PPM66_RS14705 mrpD 2798855..2800336 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  PPM66_RS14710 mrpE 2800342..2800818 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  PPM66_RS14715 mrpF 2800818..2801102 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PPM66_RS14720 mnhG 2801086..2801460 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  PPM66_RS14725 yuxO 2801499..2801879 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  PPM66_RS14730 comA 2801898..2802542 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PPM66_RS14735 comP 2802623..2804932 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  PPM66_RS14740 comX 2804947..2805114 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  PPM66_RS14745 comQ 2805102..2806001 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  PPM66_RS14750 degQ 2806186..2806326 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PPM66_RS14755 - 2806548..2806673 (+) 126 WP_003228793.1 hypothetical protein -
  PPM66_RS14760 - 2806787..2807155 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=780484 PPM66_RS14730 WP_003220716.1 2801898..2802542(-) (comA) [Bacillus subtilis subsp. subtilis strain MGP008]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=780484 PPM66_RS14730 WP_003220716.1 2801898..2802542(-) (comA) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1